Analysis of interatomic Contacts of Structural Units in PDB entry:
4ND4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4ND4 entry

There are 2 chains in PDB entry 4ND4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17PRO 333
B
 MET 17PRO 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4ND4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 44Right-handed alpha
Helix 2
2
A
57 73Right-handed alpha
Helix 3
3
A
84 89Right-handed 310
Helix 4
4
A
108 111Right-handed 310
Helix 5
5
A
112 131Right-handed alpha
Helix 6
6
A
141 154Right-handed alpha
Helix 7
7
A
156 158Right-handed 310
Helix 8
8
A
164 181Right-handed alpha
Helix 9
9
A
183 185Right-handed 310
Helix 10
10
A
203 205Right-handed 310
Helix 11
11
A
212 218Right-handed alpha
Helix 12
12
A
221 244Right-handed alpha
Helix 13
13
A
247 263Right-handed alpha
Helix 14
14
A
308 331Right-handed alpha
Helix 15
15
B
30 43Right-handed alpha
Helix 16
16
B
57 73Right-handed alpha
Helix 17
17
B
84 89Right-handed 310
Helix 18
18
B
108 111Right-handed 310
Helix 19
19
B
112 131Right-handed alpha
Helix 20
20
B
141 154Right-handed alpha
Helix 21
21
B
156 158Right-handed 310
Helix 22
22
B
164 181Right-handed alpha
Helix 23
23
B
183 185Right-handed 310
Helix 24
24
B
203 205Right-handed 310
Helix 25
25
B
212 218Right-handed alpha
Helix 26
26
B
221 244Right-handed alpha
Helix 27
27
B
247 263Right-handed alpha
Helix 28
28
B
308 331Right-handed alpha
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There are 8 sheets in PDB entry 4ND4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
48 52parallel
Strand 3
A
23 27parallel
Strand 4
A
93 96parallel
Strand 5
A
134 137parallel
Strand 6
A
160 162parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
207 208anti-parallel
Strand 3
A
210 210anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
200 201anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 275first strand
Strand 2
A
285 294anti-parallel
Strand 3
A
297 302anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
48 52parallel
Strand 3
B
23 27parallel
Strand 4
B
93 96parallel
Strand 5
B
134 137parallel
Strand 6
B
160 162parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
207 208anti-parallel
Strand 3
B
210 210anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
200 201anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 275first strand
Strand 2
B
285 294anti-parallel
Strand 3
B
297 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il