Analysis of interatomic Contacts of Structural Units in PDB entry:
4NDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NDH entry

There are 6 chains in PDB entry 4NDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 161TRP 340
B
HIS 163TRP 340
D
G 1 C 10
E
G 1 C 10
G
G 1 C 10
H
G 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4NDH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
166 168Right-handed 310
Helix 2
2
A
169 175Right-handed alpha
Helix 3
3
A
212 216Right-handed 310
Helix 4
4
A
217 219Right-handed 310
Helix 5
5
A
220 240Right-handed alpha
Helix 6
6
A
241 243Right-handed 310
Helix 7
7
A
275 284Right-handed alpha
Helix 8
8
A
290 301Right-handed alpha
Helix 9
9
A
308 313Right-handed alpha
Helix 10
10
A
328 337Right-handed alpha
Helix 11
11
A
338 340Right-handed 310
Helix 12
12
B
165 168Right-handed 310
Helix 13
13
B
169 176Right-handed alpha
Helix 14
14
B
212 216Right-handed 310
Helix 15
15
B
217 219Right-handed 310
Helix 16
16
B
220 239Right-handed alpha
Helix 17
17
B
275 284Right-handed alpha
Helix 18
18
B
290 301Right-handed alpha
Helix 19
19
B
308 313Right-handed alpha
Helix 20
20
B
328 337Right-handed alpha
Helix 21
21
B
338 340Right-handed 310
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There are 4 sheets in PDB entry 4NDH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 184first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
261 265anti-parallel
Strand 5
A
246 251anti-parallel
Strand 6
A
287 289anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 318first strand
Strand 2
A
325 326anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
181 184first strand
Strand 2
B
188 192anti-parallel
Strand 3
B
201 206anti-parallel
Strand 4
B
261 265anti-parallel
Strand 5
B
246 251anti-parallel
Strand 6
B
287 289anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 318first strand
Strand 2
B
325 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il