Analysis of interatomic Contacts of Structural Units in PDB entry:
4NY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NY4 entry

There is 1 chain in PDB entry 4NY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 28GLY 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4NY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 37Right-handed alpha
Helix 2
2
A
49 55Right-handed 310
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
111 117Right-handed 310
Helix 6
6
A
123 134Right-handed alpha
Helix 7
7
A
135 137Right-handed 310
Helix 8
8
A
138 167Right-handed alpha
Helix 9
9
A
172 188Right-handed alpha
Helix 10
10
A
201 209Right-handed alpha
Helix 11
11
A
217 226Right-handed alpha
Helix 12
12
A
228 236Right-handed alpha
Helix 13
13
A
242 258Right-handed alpha
Helix 14
14
A
272 279Right-handed alpha
Helix 15
15
A
291 324Right-handed alpha
Helix 16
16
A
324 339Right-handed alpha
Helix 17
17
A
346 353Right-handed alpha
Helix 18
18
A
353 367Right-handed alpha
Helix 19
19
A
398 403Right-handed alpha
Helix 20
20
A
415 420Right-handed 310
Helix 21
21
A
423 427Right-handed 310
Helix 22
22
A
444 462Right-handed alpha
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There are 3 sheets in PDB entry 4NY4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
393 397parallel
Strand 4
A
372 376anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
463 467anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
386 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il