Analysis of interatomic Contacts of Structural Units in PDB entry:
4NZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4NZD entry

There are 3 chains in PDB entry 4NZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1HIS 218
B
CYS 1SER 208
C
CYS 1HIS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4NZD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
96 98Right-handed 310
Helix 2
2
A
167 171Right-handed 310
Helix 3
3
B
96 98Right-handed 310
Helix 4
4
B
167 171Right-handed 310
Helix 5
5
C
96 98Right-handed 310
Helix 6
6
C
167 171Right-handed 310
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There are 14 sheets in PDB entry 4NZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 8first strand
Strand 2
A
14 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 53first strand
Strand 2
A
58 61anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
74 80first strand
Strand 2
A
87 94anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 111first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
163 166anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 157first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
176 185anti-parallel
Strand 4
A
202 205anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 8first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
49 53anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
27 33first strand
Strand 2
B
74 80anti-parallel
Strand 3
B
87 94anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 111first strand
Strand 2
B
115 120anti-parallel
Strand 3
B
163 166anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
153 157first strand
Strand 2
B
135 143anti-parallel
Strand 3
B
176 185anti-parallel
Strand 4
B
202 205anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 8first strand
Strand 2
C
14 18anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
49 53first strand
Strand 2
C
58 61anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
74 80first strand
Strand 2
C
87 94anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
105 111first strand
Strand 2
C
115 120anti-parallel
Strand 3
C
163 166anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
153 157first strand
Strand 2
C
135 143anti-parallel
Strand 3
C
176 185anti-parallel
Strand 4
C
202 205anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il