Analysis of interatomic Contacts of Structural Units in PDB entry:
4O9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4O9U entry

There are 6 chains in PDB entry 4O9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PRO 94
B
MET 1LEU 450
C
MET 1PHE 90
D
MET 1LEU 450
E
MET 1LEU 372
F
MET 1GLY 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 4O9U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
4 24Right-handed alpha
Helix 2
2
A
32 42Right-handed alpha
Helix 3
3
A
44 55Right-handed alpha
Helix 4
4
A
59 88Right-handed alpha
Helix 5
5
B
2 22Right-handed alpha
Helix 6
6
B
27 47Right-handed alpha
Helix 7
7
B
54 75Right-handed alpha
Helix 8
8
B
80 107Right-handed alpha
Helix 9
9
B
111 140Right-handed alpha
Helix 10
10
B
156 170Right-handed alpha
Helix 11
11
B
180 194Right-handed alpha
Helix 12
12
B
202 225Right-handed alpha
Helix 13
13
B
227 252Right-handed alpha
Helix 14
14
B
255 260Right-handed alpha
Helix 15
15
B
281 290Right-handed alpha
Helix 16
16
B
300 307Right-handed alpha
Helix 17
17
B
308 322Right-handed alpha
Helix 18
18
B
339 349Right-handed alpha
Helix 19
19
B
351 353Right-handed 310
Helix 20
20
B
357 368Right-handed 310
Helix 21
21
B
398 402Right-handed 310
Helix 22
22
B
435 449Right-handed alpha
Helix 23
23
C
4 24Right-handed alpha
Helix 24
24
C
25 26Right-handed 310
Helix 25
25
C
27 29Right-handed 310
Helix 26
26
C
30 42Right-handed alpha
Helix 27
27
C
44 54Right-handed alpha
Helix 28
28
C
60 89Right-handed alpha
Helix 29
29
D
4 24Right-handed alpha
Helix 30
30
D
27 46Right-handed alpha
Helix 31
31
D
47 49Right-handed 310
Helix 32
32
D
54 75Right-handed alpha
Helix 33
33
D
77 80Right-handed 310
Helix 34
34
D
81 106Right-handed alpha
Helix 35
35
D
111 141Right-handed alpha
Helix 36
36
D
152 170Right-handed alpha
Helix 37
37
D
176 195Right-handed alpha
Helix 38
38
D
203 226Right-handed alpha
Helix 39
39
D
227 251Right-handed alpha
Helix 40
40
D
281 292Right-handed alpha
Helix 41
41
D
300 307Right-handed alpha
Helix 42
42
D
308 323Right-handed alpha
Helix 43
43
D
339 348Right-handed alpha
Helix 44
44
D
358 362Right-handed alpha
Helix 45
45
D
363 368Right-handed 310
Helix 46
46
D
377 386Right-handed 310
Helix 47
47
D
435 448Right-handed alpha
Helix 48
48
E
20 29Right-handed alpha
Helix 49
49
E
40 45Right-handed 310
Helix 50
50
E
47 53Right-handed alpha
Helix 51
51
E
78 83Right-handed alpha
Helix 52
52
E
100 109Right-handed alpha
Helix 53
53
E
118 120Right-handed 310
Helix 54
54
E
124 128Right-handed 310
Helix 55
55
E
130 151Right-handed alpha
Helix 56
56
E
176 190Right-handed alpha
Helix 57
57
E
201 208Right-handed alpha
Helix 58
58
E
236 248Right-handed alpha
Helix 59
59
E
268 274Right-handed alpha
Helix 60
60
E
285 288Right-handed 310
Helix 61
61
E
318 332Right-handed alpha
Helix 62
62
E
333 337Right-handed 310
Helix 63
63
E
365 371Right-handed alpha
Helix 64
64
F
20 29Right-handed alpha
Helix 65
65
F
47 53Right-handed alpha
Helix 66
66
F
62 66Right-handed 310
Helix 67
67
F
78 83Right-handed alpha
Helix 68
68
F
96 111Right-handed alpha
Helix 69
69
F
123 127Right-handed 310
Helix 70
70
F
130 135Right-handed alpha
Helix 71
71
F
136 151Right-handed alpha
Helix 72
72
F
176 190Right-handed alpha
Helix 73
73
F
200 210Right-handed alpha
Helix 74
74
F
237 242Right-handed alpha
Helix 75
75
F
243 244Right-handed 310
Helix 76
76
F
245 249Right-handed 310
Helix 77
77
F
285 289Right-handed 310
Helix 78
78
F
313 318Right-handed alpha
Helix 79
79
F
318 334Right-handed alpha
Helix 80
80
F
349 354Right-handed alpha
Helix 81
81
F
366 370Right-handed 310
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There are 8 sheets in PDB entry 4O9U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
355 356first strand
Strand 2
B
325 329parallel
Strand 3
B
294 299parallel
Strand 4
B
370 374parallel
Strand 5
B
404 408parallel
Strand 6
B
429 432parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
355 357first strand
Strand 2
D
325 330parallel
Strand 3
D
294 299parallel
Strand 4
D
370 374parallel
Strand 5
D
405 409parallel
Strand 6
D
429 433parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
57 59first strand
Strand 2
E
33 37parallel
Strand 3
E
3 6parallel
Strand 4
E
70 72parallel
Strand 5
E
90 93parallel
Strand 6
E
113 116parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
158 159first strand
Strand 2
E
164 165anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
212 214first strand
Strand 2
E
192 196parallel
Strand 3
E
169 173parallel
Strand 4
E
251 254parallel
Strand 5
E
280 283parallel
Strand 6
E
306 309parallel
Strand 7
E
301 303anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
56 59first strand
Strand 2
F
33 37parallel
Strand 3
F
3 6parallel
Strand 4
F
70 72parallel
Strand 5
F
90 92parallel
Strand 6
F
113 115parallel
Strand 7
F
356 359anti-parallel
Strand 8
F
362 363anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
158 160first strand
Strand 2
F
163 165anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
192 196first strand
Strand 2
F
169 173parallel
Strand 3
F
251 254parallel
Strand 4
F
280 283parallel
Strand 5
F
306 309parallel
Strand 6
F
300 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il