Analysis of interatomic Contacts of Structural Units in PDB entry:
4OBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OBZ entry

There are 4 chains in PDB entry 4OBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 2SER 98
B
GLY 107ALA 346
C
PRO -4SER 98
D
GLY 106ALA 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4OBZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
51 56Right-handed 310
Helix 2
2
A
60 64Right-handed 310
Helix 3
3
B
124 129Right-handed alpha
Helix 4
4
B
139 147Right-handed 310
Helix 5
5
B
149 157Right-handed alpha
Helix 6
6
B
187 189Right-handed 310
Helix 7
7
B
240 251Right-handed alpha
Helix 8
8
B
264 268Right-handed 310
Helix 9
9
B
322 328Right-handed alpha
Helix 10
10
C
51 56Right-handed 310
Helix 11
11
C
60 64Right-handed 310
Helix 12
12
D
124 129Right-handed alpha
Helix 13
13
D
139 147Right-handed 310
Helix 14
14
D
149 157Right-handed alpha
Helix 15
15
D
187 189Right-handed 310
Helix 16
16
D
240 251Right-handed alpha
Helix 17
17
D
264 268Right-handed 310
Helix 18
18
D
322 328Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4OBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 77first strand
Strand 2
A
82 94anti-parallel
Strand 3
A
14 21anti-parallel
Strand 4
A
3 10anti-parallel
Strand 5
B
179 183anti-parallel
Strand 6
B
164 169anti-parallel
Strand 7
B
329 334anti-parallel
Strand 8
B
339 345anti-parallel
Strand 9
B
191 199anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 77first strand
Strand 2
A
82 94anti-parallel
Strand 3
B
108 120anti-parallel
Strand 4
A
39 42parallel
Strand 5
B
133 136anti-parallel
Strand 6
A
26 33parallel
Strand 7
A
14 21anti-parallel
Strand 8
A
3 10anti-parallel
Strand 9
B
179 183anti-parallel
Strand 10
B
164 169anti-parallel
Strand 11
B
329 334anti-parallel
Strand 12
B
339 345anti-parallel
Strand 13
B
191 199anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 221first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
274 278anti-parallel
Strand 4
B
281 285anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 221first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
319 321parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 239first strand
Strand 2
B
306 308parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
254 257first strand
Strand 2
B
260 263anti-parallel
Strand 3
B
299 304anti-parallel
Strand 4
B
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 77first strand
Strand 2
C
82 94anti-parallel
Strand 3
C
14 21anti-parallel
Strand 4
C
3 10anti-parallel
Strand 5
D
179 183anti-parallel
Strand 6
D
164 169anti-parallel
Strand 7
D
329 334anti-parallel
Strand 8
D
339 345anti-parallel
Strand 9
D
191 199anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 77first strand
Strand 2
C
82 94anti-parallel
Strand 3
D
108 120anti-parallel
Strand 4
C
39 42parallel
Strand 5
D
133 136anti-parallel
Strand 6
C
26 33parallel
Strand 7
C
14 21anti-parallel
Strand 8
C
3 10anti-parallel
Strand 9
D
179 183anti-parallel
Strand 10
D
164 169anti-parallel
Strand 11
D
329 334anti-parallel
Strand 12
D
339 345anti-parallel
Strand 13
D
191 199anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
220 221first strand
Strand 2
D
207 215anti-parallel
Strand 3
D
274 278anti-parallel
Strand 4
D
281 285anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
220 221first strand
Strand 2
D
207 215anti-parallel
Strand 3
D
226 230anti-parallel
Strand 4
D
319 321parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
237 239first strand
Strand 2
D
306 308parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
254 255first strand
Strand 2
D
261 263anti-parallel
Strand 3
D
301 304anti-parallel
Strand 4
D
291 294anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il