Analysis of interatomic Contacts of Structural Units in PDB entry:
4PMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PMH entry

There is 1 chain in PDB entry 4PMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1ALA 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4PMH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
22 28Right-handed alpha
Helix 3
AA3
A
50 62Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
122 124Right-handed 310
Helix 7
AA7
A
130 139Right-handed alpha
Helix 8
AA8
A
144 149Right-handed alpha
Helix 9
AA9
A
277 284Right-handed alpha
Helix 10
AB1
A
298 302Right-handed 310
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There are 4 sheets in PDB entry 4PMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
6 7first strand
Strand 2
A
10 11anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 44first strand
Strand 2
A
67 71parallel
Strand 3
A
89 93parallel
Strand 4
A
160 162parallel
Strand 5
A
188 191parallel
Strand 6
A
213 217parallel
Strand 7
A
233 237parallel
Strand 8
A
267 270parallel
Strand 9
A
311 315parallel
Strand 10
A
355 359parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
74 76first strand
Strand 2
A
101 105parallel
Strand 3
A
165 168parallel
Strand 4
A
194 196parallel
Strand 5
A
220 223parallel
Strand 6
A
240 243parallel
Strand 7
A
273 276parallel
Strand 8
A
318 319parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 82first strand
Strand 2
A
152 154parallel
Strand 3
A
181 183parallel
Strand 4
A
202 204parallel
Strand 5
A
225 230parallel
Strand 6
A
252 257parallel
Strand 7
A
286 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il