Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q76


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q76 entry

There are 4 chains in PDB entry 4Q76 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 17HIS 240
A
 MET 242LYS 429
B
 VAL 17HIS 240
B
 MET 242LYS 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4Q76. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 24Right-handed alpha
Helix 2
2
A
25 31Right-handed 310
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
74 95Right-handed alpha
Helix 5
5
A
99 101Right-handed 310
Helix 6
6
A
108 120Right-handed alpha
Helix 7
7
A
120 125Right-handed alpha
Helix 8
8
A
138 141Right-handed 310
Helix 9
9
A
142 153Right-handed alpha
Helix 10
10
A
168 176Right-handed alpha
Helix 11
11
A
197 207Right-handed alpha
Helix 12
12
A
226 231Right-handed alpha
Helix 13
13
A
240 242Right-handed 310
Helix 14
14
A
254 261Right-handed alpha
Helix 15
15
A
285 289Right-handed 310
Helix 16
16
A
294 312Right-handed alpha
Helix 17
17
A
312 333Right-handed alpha
Helix 18
18
A
362 375Right-handed alpha
Helix 19
19
A
385 393Right-handed alpha
Helix 20
20
A
407 427Right-handed alpha
Helix 21
21
B
18 24Right-handed alpha
Helix 22
22
B
25 31Right-handed 310
Helix 23
23
B
51 65Right-handed alpha
Helix 24
24
B
74 95Right-handed alpha
Helix 25
25
B
99 101Right-handed 310
Helix 26
26
B
108 120Right-handed alpha
Helix 27
27
B
138 141Right-handed 310
Helix 28
28
B
142 153Right-handed alpha
Helix 29
29
B
168 176Right-handed alpha
Helix 30
30
B
197 207Right-handed alpha
Helix 31
31
B
226 231Right-handed alpha
Helix 32
32
B
240 242Right-handed 310
Helix 33
33
B
254 261Right-handed alpha
Helix 34
34
B
285 289Right-handed 310
Helix 35
35
B
294 312Right-handed alpha
Helix 36
36
B
312 333Right-handed alpha
Helix 37
37
B
362 375Right-handed alpha
Helix 38
38
B
385 393Right-handed alpha
Helix 39
39
B
407 427Right-handed alpha
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There are 10 sheets in PDB entry 4Q76. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
37 38anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
376 377parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
249 253anti-parallel
Strand 3
A
234 238anti-parallel
Strand 4
A
211 215parallel
Strand 5
A
180 186parallel
Strand 6
A
130 134parallel
Strand 7
A
155 159parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 274first strand
Strand 2
A
279 281anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
397 401anti-parallel
Strand 4
A
379 381anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
37 38anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
376 377parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 106first strand
Strand 2
B
249 253anti-parallel
Strand 3
B
234 238anti-parallel
Strand 4
B
211 215parallel
Strand 5
B
180 186parallel
Strand 6
B
130 134parallel
Strand 7
B
155 159parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 274first strand
Strand 2
B
279 281anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
353 358anti-parallel
Strand 3
B
397 401anti-parallel
Strand 4
B
379 381anti-parallel
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