Analysis of interatomic Contacts of Structural Units in PDB entry:
4QY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4QY2 entry

There are 5 chains in PDB entry 4QY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 318
B	GLY 324	ASN 497
C	ASP 1	GLU 318
D	GLY 324	ASN 497
E	ASP 1	ASN 303

There are 50 helices in PDB entry 4QY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	62	Right-handed alpha
Helix 2	2	A	63	70	Right-handed 310
Helix 3	3	A	94	103	Right-handed alpha
Helix 4	4	A	180	189	Right-handed alpha
Helix 5	5	B	360	380	Right-handed alpha
Helix 6	6	B	397	449	Right-handed alpha
Helix 7	7	B	468	477	Right-handed alpha
Helix 8	8	B	481	484	Right-handed 310
Helix 9	9	B	485	495	Right-handed alpha
Helix 10	10	C	55	62	Right-handed alpha
Helix 11	11	C	63	70	Right-handed 310
Helix 12	12	C	94	104	Right-handed alpha
Helix 13	13	C	180	189	Right-handed alpha
Helix 14	14	D	361	380	Right-handed alpha
Helix 15	15	D	397	450	Right-handed alpha
Helix 16	16	D	468	477	Right-handed alpha
Helix 17	17	D	481	495	Right-handed alpha
Helix 18	18	E	55	62	Right-handed alpha
Helix 19	19	E	63	70	Right-handed 310
Helix 20	20	E	94	103	Right-handed alpha
Helix 21	21	E	180	189	Right-handed alpha
Helix 22	22	F	361	380	Right-handed alpha
Helix 23	23	F	397	450	Right-handed alpha
Helix 24	24	F	468	477	Right-handed alpha
Helix 25	25	F	481	484	Right-handed 310
Helix 26	26	F	485	495	Right-handed alpha
Helix 27	27	G	55	62	Right-handed alpha
Helix 28	28	G	63	70	Right-handed 310
Helix 29	29	G	94	103	Right-handed alpha
Helix 30	30	G	180	189	Right-handed alpha
Helix 31	31	H	360	380	Right-handed alpha
Helix 32	32	H	397	450	Right-handed alpha
Helix 33	33	H	468	477	Right-handed alpha
Helix 34	34	H	481	495	Right-handed alpha
Helix 35	35	I	56	62	Right-handed alpha
Helix 36	36	I	63	70	Right-handed 310
Helix 37	37	I	94	103	Right-handed alpha
Helix 38	38	I	180	189	Right-handed alpha
Helix 39	39	J	360	380	Right-handed alpha
Helix 40	40	J	397	449	Right-handed alpha
Helix 41	41	J	468	477	Right-handed alpha
Helix 42	42	J	482	495	Right-handed alpha
Helix 43	43	K	55	62	Right-handed alpha
Helix 44	44	K	63	70	Right-handed 310
Helix 45	45	K	94	103	Right-handed alpha
Helix 46	46	K	180	189	Right-handed alpha
Helix 47	47	L	361	380	Right-handed alpha
Helix 48	48	L	397	450	Right-handed alpha
Helix 49	49	L	468	477	Right-handed alpha
Helix 50	50	L	485	494	Right-handed alpha

There are 67 sheets in PDB entry 4QY2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	359	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	B	460	463	anti-parallel
Strand 5	B	453	455	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	24	26	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	308	310	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	287	288	parallel
Strand 3	A	300	301	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	266	267	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	76	79	parallel
Strand 3	A	258	261	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	249	253	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	222	230	parallel
Strand 3	A	169	177	anti-parallel
Strand 4	A	244	247	anti-parallel
Strand 5	A	142	147	anti-parallel
Strand 6	A	121	125	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	135	137	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	195	198	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	274	276	anti-parallel
Strand 3	A	294	297	anti-parallel
Strand 4	B	385	386	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	360	first strand
Strand 2	D	345	351	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	D	460	463	anti-parallel
Strand 5	D	453	455	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	24	26	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	308	310	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	287	288	parallel
Strand 3	C	300	301	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	266	267	parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	76	79	parallel
Strand 3	C	258	261	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	249	253	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	222	230	parallel
Strand 3	C	169	177	anti-parallel
Strand 4	C	244	247	anti-parallel
Strand 5	C	142	147	anti-parallel
Strand 6	C	121	125	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	132	first strand
Strand 2	C	135	137	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	235	240	anti-parallel
Strand 3	C	195	198	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	274	276	anti-parallel
Strand 3	C	295	296	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	360	first strand
Strand 2	F	345	350	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	F	460	463	anti-parallel
Strand 5	F	453	455	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	24	26	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	308	310	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	287	288	parallel
Strand 3	E	300	301	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	266	267	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	76	79	parallel
Strand 3	E	258	261	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	107	112	anti-parallel
Strand 3	E	249	253	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	92	first strand
Strand 2	E	222	230	parallel
Strand 3	E	169	177	anti-parallel
Strand 4	E	244	247	anti-parallel
Strand 5	E	142	147	anti-parallel
Strand 6	E	121	125	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	132	first strand
Strand 2	E	135	137	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	162	first strand
Strand 2	E	235	240	anti-parallel
Strand 3	E	195	198	anti-parallel
Strand 4	E	203	206	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	280	first strand
Strand 2	E	274	276	anti-parallel
Strand 3	E	295	296	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	355	359	first strand
Strand 2	H	345	350	anti-parallel
Strand 3	G	2	7	anti-parallel
Strand 4	H	460	463	anti-parallel
Strand 5	H	453	455	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	16	first strand
Strand 2	G	24	26	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	308	310	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	287	288	parallel
Strand 3	G	300	301	parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	42	first strand
Strand 2	G	266	267	parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	50	first strand
Strand 2	G	76	79	parallel
Strand 3	G	258	261	parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	73	first strand
Strand 2	G	107	112	anti-parallel
Strand 3	G	249	253	anti-parallel

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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	222	230	parallel
Strand 3	G	169	177	anti-parallel
Strand 4	G	244	247	anti-parallel
Strand 5	G	142	147	anti-parallel
Strand 6	G	121	125	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	132	first strand
Strand 2	G	135	137	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	162	first strand
Strand 2	G	235	240	anti-parallel
Strand 3	G	195	198	anti-parallel
Strand 4	G	203	206	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	279	280	first strand
Strand 2	G	274	276	anti-parallel
Strand 3	G	294	297	anti-parallel
Strand 4	H	385	386	anti-parallel

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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	354	359	first strand
Strand 2	J	345	351	anti-parallel
Strand 3	I	2	7	anti-parallel
Strand 4	J	460	463	anti-parallel
Strand 5	J	453	455	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	16	first strand
Strand 2	I	24	26	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	308	310	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	34	first strand
Strand 2	I	287	288	parallel
Strand 3	I	300	301	parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	42	first strand
Strand 2	I	266	267	parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	76	79	parallel
Strand 3	I	258	261	parallel

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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	73	first strand
Strand 2	I	107	112	anti-parallel
Strand 3	I	249	253	anti-parallel

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There are 6 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	92	first strand
Strand 2	I	222	230	parallel
Strand 3	I	169	177	anti-parallel
Strand 4	I	244	247	anti-parallel
Strand 5	I	142	147	anti-parallel
Strand 6	I	121	125	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	127	132	first strand
Strand 2	I	135	137	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	162	first strand
Strand 2	I	235	240	anti-parallel
Strand 3	I	195	198	anti-parallel
Strand 4	I	203	206	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	279	280	first strand
Strand 2	I	274	276	anti-parallel
Strand 3	I	294	296	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	355	360	first strand
Strand 2	L	345	350	anti-parallel
Strand 3	K	2	7	anti-parallel
Strand 4	L	460	463	anti-parallel
Strand 5	L	453	455	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	14	16	first strand
Strand 2	K	24	26	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	31	first strand
Strand 2	K	308	310	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	34	first strand
Strand 2	K	287	288	parallel
Strand 3	K	300	301	parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	42	first strand
Strand 2	K	266	267	parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	50	first strand
Strand 2	K	76	79	parallel
Strand 3	K	258	261	parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	73	first strand
Strand 2	K	107	112	anti-parallel
Strand 3	K	249	253	anti-parallel

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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	92	first strand
Strand 2	K	222	230	parallel
Strand 3	K	169	177	anti-parallel
Strand 4	K	244	247	anti-parallel
Strand 5	K	142	144	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	122	first strand
Strand 2	K	146	147	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	127	132	first strand
Strand 2	K	135	137	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	157	162	first strand
Strand 2	K	235	240	anti-parallel
Strand 3	K	195	198	anti-parallel
Strand 4	K	203	206	anti-parallel

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There are 4 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	279	280	first strand
Strand 2	K	274	276	anti-parallel
Strand 3	K	295	297	anti-parallel
Strand 4	L	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4QY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
4QY2