Analysis of interatomic Contacts of Structural Units in PDB entry:
4QYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QYJ entry

There are 3 chains in PDB entry 4QYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 16TYR 496
B
GLN 16TYR 496
C
GLN 16LEU 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are139 helices in PDB entry 4QYJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
54 60Right-handed alpha
Helix 2
2
A
60 66Right-handed alpha
Helix 3
3
A
67 72Right-handed alpha
Helix 4
4
A
76 91Right-handed alpha
Helix 5
5
A
92 105Right-handed alpha
Helix 6
6
A
107 115Right-handed alpha
Helix 7
7
A
116 128Right-handed alpha
Helix 8
8
A
170 186Right-handed alpha
Helix 9
9
A
198 211Right-handed alpha
Helix 10
10
A
227 234Right-handed alpha
Helix 11
11
A
246 260Right-handed alpha
Helix 12
12
A
281 295Right-handed alpha
Helix 13
13
A
296 299Right-handed 310
Helix 14
14
A
313 327Right-handed alpha
Helix 15
15
A
345 362Right-handed alpha
Helix 16
16
A
413 422Right-handed alpha
Helix 17
17
A
436 445Right-handed alpha
Helix 18
18
A
480 486Right-handed alpha
Helix 19
19
B
54 60Right-handed alpha
Helix 20
20
B
60 66Right-handed alpha
Helix 21
21
B
67 72Right-handed alpha
Helix 22
22
B
77 91Right-handed alpha
Helix 23
23
B
92 105Right-handed alpha
Helix 24
24
B
107 115Right-handed alpha
Helix 25
25
B
116 128Right-handed alpha
Helix 26
26
B
170 186Right-handed alpha
Helix 27
27
B
198 211Right-handed alpha
Helix 28
28
B
227 234Right-handed alpha
Helix 29
29
B
246 260Right-handed alpha
Helix 30
30
B
281 295Right-handed alpha
Helix 31
31
B
296 299Right-handed 310
Helix 32
32
B
313 327Right-handed alpha
Helix 33
33
B
345 362Right-handed alpha
Helix 34
34
B
413 422Right-handed alpha
Helix 35
35
B
436 445Right-handed alpha
Helix 36
36
C
54 60Right-handed alpha
Helix 37
37
C
60 66Right-handed alpha
Helix 38
38
C
67 72Right-handed alpha
Helix 39
39
C
77 91Right-handed alpha
Helix 40
40
C
92 105Right-handed alpha
Helix 41
41
C
107 115Right-handed alpha
Helix 42
42
C
116 128Right-handed alpha
Helix 43
43
C
170 186Right-handed alpha
Helix 44
44
C
198 211Right-handed alpha
Helix 45
45
C
226 234Right-handed alpha
Helix 46
46
C
246 260Right-handed alpha
Helix 47
47
C
281 295Right-handed alpha
Helix 48
48
C
296 299Right-handed 310
Helix 49
49
C
313 327Right-handed alpha
Helix 50
50
C
345 362Right-handed alpha
Helix 51
51
C
394 398Right-handed 310
Helix 52
52
C
413 422Right-handed alpha
Helix 53
53
C
436 447Right-handed alpha
Helix 54
54
D
54 60Right-handed alpha
Helix 55
55
D
60 66Right-handed alpha
Helix 56
56
D
67 72Right-handed alpha
Helix 57
57
D
77 91Right-handed alpha
Helix 58
58
D
92 105Right-handed alpha
Helix 59
59
D
107 115Right-handed alpha
Helix 60
60
D
116 128Right-handed alpha
Helix 61
61
D
170 186Right-handed alpha
Helix 62
62
D
198 211Right-handed alpha
Helix 63
63
D
227 234Right-handed alpha
Helix 64
64
D
246 260Right-handed alpha
Helix 65
65
D
281 295Right-handed alpha
Helix 66
66
D
296 299Right-handed 310
Helix 67
67
D
313 327Right-handed alpha
Helix 68
68
D
345 362Right-handed alpha
Helix 69
69
D
413 422Right-handed alpha
Helix 70
70
D
436 447Right-handed alpha
Helix 71
71
E
54 60Right-handed alpha
Helix 72
72
E
60 66Right-handed alpha
Helix 73
73
E
67 72Right-handed alpha
Helix 74
74
E
76 91Right-handed alpha
Helix 75
75
E
92 105Right-handed alpha
Helix 76
76
E
107 115Right-handed alpha
Helix 77
77
E
116 128Right-handed alpha
Helix 78
78
E
170 186Right-handed alpha
Helix 79
79
E
198 211Right-handed alpha
Helix 80
80
E
227 234Right-handed alpha
Helix 81
81
E
246 260Right-handed alpha
Helix 82
82
E
281 295Right-handed alpha
Helix 83
83
E
296 299Right-handed 310
Helix 84
84
E
313 327Right-handed alpha
Helix 85
85
E
345 362Right-handed alpha
Helix 86
86
E
413 422Right-handed alpha
Helix 87
87
E
436 445Right-handed alpha
Helix 88
88
E
480 486Right-handed alpha
Helix 89
89
F
54 60Right-handed alpha
Helix 90
90
F
60 66Right-handed alpha
Helix 91
91
F
67 72Right-handed alpha
Helix 92
92
F
77 91Right-handed alpha
Helix 93
93
F
92 105Right-handed alpha
Helix 94
94
F
107 115Right-handed alpha
Helix 95
95
F
116 128Right-handed alpha
Helix 96
96
F
170 186Right-handed alpha
Helix 97
97
F
198 211Right-handed alpha
Helix 98
98
F
227 234Right-handed alpha
Helix 99
99
F
246 260Right-handed alpha
Helix 100
100
F
282 295Right-handed alpha
Helix 101
101
F
296 299Right-handed 310
Helix 102
102
F
313 327Right-handed alpha
Helix 103
103
F
345 362Right-handed alpha
Helix 104
104
F
413 422Right-handed alpha
Helix 105
105
F
436 445Right-handed alpha
Helix 106
106
G
54 60Right-handed alpha
Helix 107
107
G
60 66Right-handed alpha
Helix 108
108
G
67 72Right-handed alpha
Helix 109
109
G
77 91Right-handed alpha
Helix 110
110
G
92 105Right-handed alpha
Helix 111
111
G
107 115Right-handed alpha
Helix 112
112
G
116 128Right-handed alpha
Helix 113
113
G
170 186Right-handed alpha
Helix 114
114
G
198 211Right-handed alpha
Helix 115
115
G
227 234Right-handed alpha
Helix 116
116
G
246 260Right-handed alpha
Helix 117
117
G
281 295Right-handed alpha
Helix 118
118
G
296 299Right-handed 310
Helix 119
119
G
313 327Right-handed alpha
Helix 120
120
G
345 362Right-handed alpha
Helix 121
121
G
413 422Right-handed alpha
Helix 122
122
G
436 447Right-handed alpha
Helix 123
123
H
54 60Right-handed alpha
Helix 124
124
H
60 66Right-handed alpha
Helix 125
125
H
67 72Right-handed alpha
Helix 126
126
H
77 91Right-handed alpha
Helix 127
127
H
92 105Right-handed alpha
Helix 128
128
H
107 115Right-handed alpha
Helix 129
129
H
116 128Right-handed alpha
Helix 130
130
H
170 186Right-handed alpha
Helix 131
131
H
198 211Right-handed alpha
Helix 132
132
H
226 234Right-handed alpha
Helix 133
133
H
246 260Right-handed alpha
Helix 134
134
H
281 295Right-handed alpha
Helix 135
135
H
296 299Right-handed 310
Helix 136
136
H
313 327Right-handed alpha
Helix 137
137
H
345 362Right-handed alpha
Helix 138
138
H
413 422Right-handed alpha
Helix 139
139
H
436 447Right-handed alpha
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There are 35 sheets in PDB entry 4QYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 18first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 35first strand
Strand 2
A
42 47anti-parallel
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There are 20 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
365 368first strand
Strand 2
B
384 387anti-parallel
Strand 3
B
405 411parallel
Strand 4
B
304 310parallel
Strand 5
B
272 276parallel
Strand 6
B
430 433parallel
Strand 7
B
451 454parallel
Strand 8
A
487 495parallel
Strand 9
A
150 158anti-parallel
Strand 10
A
135 138anti-parallel
Strand 11
D
135 138anti-parallel
Strand 12
D
150 158anti-parallel
Strand 13
D
487 495anti-parallel
Strand 14
C
451 454parallel
Strand 15
C
429 433parallel
Strand 16
C
272 276parallel
Strand 17
C
304 310parallel
Strand 18
C
405 411parallel
Strand 19
C
384 387parallel
Strand 20
C
365 368anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 220first strand
Strand 2
A
188 192parallel
Strand 3
A
161 165parallel
Strand 4
A
240 244parallel
Strand 5
A
263 267parallel
Strand 6
A
473 474anti-parallel
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There are 20 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
365 368first strand
Strand 2
A
384 387anti-parallel
Strand 3
A
405 411parallel
Strand 4
A
304 310parallel
Strand 5
A
272 276parallel
Strand 6
A
429 433parallel
Strand 7
A
451 454parallel
Strand 8
B
487 495parallel
Strand 9
B
150 158anti-parallel
Strand 10
B
135 138anti-parallel
Strand 11
C
135 138anti-parallel
Strand 12
C
150 158anti-parallel
Strand 13
C
487 495anti-parallel
Strand 14
D
451 454parallel
Strand 15
D
430 433parallel
Strand 16
D
272 276parallel
Strand 17
D
304 310parallel
Strand 18
D
405 411parallel
Strand 19
D
384 387parallel
Strand 20
D
365 368anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
426 427first strand
Strand 2
A
469 470anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 18first strand
Strand 2
B
23 24anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 36first strand
Strand 2
B
41 47anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
218 220first strand
Strand 2
B
188 192parallel
Strand 3
B
161 165parallel
Strand 4
B
240 244parallel
Strand 5
B
263 267parallel
Strand 6
B
473 474anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
426 427first strand
Strand 2
B
469 470anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 18first strand
Strand 2
C
23 24anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
31 35first strand
Strand 2
C
42 47anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
218 220first strand
Strand 2
C
188 192parallel
Strand 3
C
161 165parallel
Strand 4
C
240 244parallel
Strand 5
C
263 267parallel
Strand 6
C
473 474anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
426 427first strand
Strand 2
C
469 470anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 18first strand
Strand 2
D
23 24anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
31 36first strand
Strand 2
D
41 47anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
218 220first strand
Strand 2
D
188 192parallel
Strand 3
D
161 165parallel
Strand 4
D
240 244parallel
Strand 5
D
263 267parallel
Strand 6
D
473 474anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
426 427first strand
Strand 2
D
469 470anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 18first strand
Strand 2
E
23 24anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
31 35first strand
Strand 2
E
42 47anti-parallel
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There are 11 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
365 368first strand
Strand 2
F
384 387anti-parallel
Strand 3
F
405 411parallel
Strand 4
F
304 310parallel
Strand 5
F
272 276parallel
Strand 6
F
429 433parallel
Strand 7
F
451 454parallel
Strand 8
E
487 495parallel
Strand 9
E
150 158anti-parallel
Strand 10
E
135 138anti-parallel
Strand 11
H
135 137anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
218 220first strand
Strand 2
E
188 192parallel
Strand 3
E
161 165parallel
Strand 4
E
240 244parallel
Strand 5
E
263 267parallel
Strand 6
E
473 474anti-parallel
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There are 20 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
365 368first strand
Strand 2
E
384 387anti-parallel
Strand 3
E
405 411parallel
Strand 4
E
304 310parallel
Strand 5
E
272 276parallel
Strand 6
E
429 433parallel
Strand 7
E
451 454parallel
Strand 8
F
487 495parallel
Strand 9
F
150 158anti-parallel
Strand 10
F
135 138anti-parallel
Strand 11
G
135 138anti-parallel
Strand 12
G
150 158anti-parallel
Strand 13
G
487 495anti-parallel
Strand 14
H
451 454parallel
Strand 15
H
430 433parallel
Strand 16
H
272 276parallel
Strand 17
H
304 310parallel
Strand 18
H
405 411parallel
Strand 19
H
384 387parallel
Strand 20
H
365 368anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
17 18first strand
Strand 2
F
23 24anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
31 36first strand
Strand 2
F
41 47anti-parallel
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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
218 220first strand
Strand 2
F
188 192parallel
Strand 3
F
161 165parallel
Strand 4
F
240 244parallel
Strand 5
F
263 267parallel
Strand 6
F
473 474anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
17 18first strand
Strand 2
G
23 24anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
31 35first strand
Strand 2
G
42 47anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
218 220first strand
Strand 2
G
188 192parallel
Strand 3
G
161 165parallel
Strand 4
G
240 244parallel
Strand 5
G
263 267parallel
Strand 6
G
473 474anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
365 368first strand
Strand 2
G
384 387anti-parallel
Strand 3
G
405 411parallel
Strand 4
G
304 310parallel
Strand 5
G
272 276parallel
Strand 6
G
429 433parallel
Strand 7
G
451 454parallel
Strand 8
H
487 495parallel
Strand 9
H
150 158anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
426 427first strand
Strand 2
G
469 470anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
17 18first strand
Strand 2
H
23 24anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
31 35first strand
Strand 2
H
42 47anti-parallel
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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
218 220first strand
Strand 2
H
188 192parallel
Strand 3
H
161 165parallel
Strand 4
H
240 244parallel
Strand 5
H
263 267parallel
Strand 6
H
473 474anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
426 427first strand
Strand 2
H
469 470anti-parallel
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