Analysis of interatomic Contacts of Structural Units in PDB entry:
4QYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QYZ entry

There are 5 chains in PDB entry 4QYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1PRO 495
B
ASP 3ASN 159
C
ASP 3ASN 159
D
MET 1GLY 361
E
MET 1ARG 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are131 helices in PDB entry 4QYZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
24 30Right-handed alpha
Helix 2
2
A
40 59Right-handed alpha
Helix 3
3
A
63 73Right-handed alpha
Helix 4
4
A
76 91Right-handed alpha
Helix 5
5
A
114 119Right-handed alpha
Helix 6
6
A
140 154Right-handed alpha
Helix 7
7
A
180 188Right-handed alpha
Helix 8
8
A
191 199Right-handed alpha
Helix 9
9
A
224 226Right-handed 310
Helix 10
10
A
227 233Right-handed alpha
Helix 11
11
A
305 309Right-handed 310
Helix 12
12
A
310 315Right-handed alpha
Helix 13
13
A
328 338Right-handed alpha
Helix 14
14
A
374 406Right-handed alpha
Helix 15
15
A
410 413Right-handed 310
Helix 16
16
A
414 438Right-handed alpha
Helix 17
17
A
444 471Right-handed alpha
Helix 18
18
A
472 474Right-handed 310
Helix 19
19
A
475 493Right-handed alpha
Helix 20
20
B
6 16Right-handed alpha
Helix 21
21
B
18 27Right-handed alpha
Helix 22
22
B
30 36Right-handed 310
Helix 23
23
B
37 45Right-handed alpha
Helix 24
24
B
46 48Right-handed 310
Helix 25
25
B
54 66Right-handed alpha
Helix 26
26
B
86 95Right-handed alpha
Helix 27
27
B
98 108Right-handed alpha
Helix 28
28
B
109 125Right-handed alpha
Helix 29
29
B
129 139Right-handed alpha
Helix 30
30
B
142 159Right-handed alpha
Helix 31
31
C
6 16Right-handed alpha
Helix 32
32
C
18 27Right-handed alpha
Helix 33
33
C
30 36Right-handed 310
Helix 34
34
C
37 45Right-handed alpha
Helix 35
35
C
46 48Right-handed 310
Helix 36
36
C
51 53Right-handed 310
Helix 37
37
C
54 66Right-handed alpha
Helix 38
38
C
86 95Right-handed alpha
Helix 39
39
C
98 108Right-handed alpha
Helix 40
40
C
109 125Right-handed alpha
Helix 41
41
C
129 139Right-handed alpha
Helix 42
42
C
141 159Right-handed alpha
Helix 43
43
D
40 51Right-handed alpha
Helix 44
44
D
51 58Right-handed alpha
Helix 45
45
D
68 80Right-handed alpha
Helix 46
46
D
84 97Right-handed alpha
Helix 47
47
D
115 132Right-handed alpha
Helix 48
48
D
135 145Right-handed alpha
Helix 49
49
D
146 157Right-handed alpha
Helix 50
50
D
159 164Right-handed alpha
Helix 51
51
D
170 175Right-handed alpha
Helix 52
52
D
232 239Right-handed alpha
Helix 53
53
D
243 261Right-handed alpha
Helix 54
54
D
290 295Right-handed 310
Helix 55
55
D
304 323Right-handed alpha
Helix 56
56
D
349 359Right-handed alpha
Helix 57
57
E
40 51Right-handed alpha
Helix 58
58
E
51 58Right-handed alpha
Helix 59
59
E
68 80Right-handed alpha
Helix 60
60
E
84 97Right-handed alpha
Helix 61
61
E
115 133Right-handed alpha
Helix 62
62
E
135 146Right-handed alpha
Helix 63
63
E
146 153Right-handed alpha
Helix 64
64
E
154 156Right-handed 310
Helix 65
65
E
157 164Right-handed alpha
Helix 66
66
E
232 239Right-handed alpha
Helix 67
67
E
243 261Right-handed alpha
Helix 68
68
E
266 271Right-handed alpha
Helix 69
69
E
290 295Right-handed 310
Helix 70
70
E
304 323Right-handed alpha
Helix 71
71
E
349 359Right-handed alpha
Helix 72
72
F
40 51Right-handed alpha
Helix 73
73
F
51 58Right-handed alpha
Helix 74
74
F
68 83Right-handed alpha
Helix 75
75
F
84 97Right-handed alpha
Helix 76
76
F
115 132Right-handed alpha
Helix 77
77
F
135 146Right-handed alpha
Helix 78
78
F
146 157Right-handed alpha
Helix 79
79
F
157 164Right-handed alpha
Helix 80
80
F
232 239Right-handed alpha
Helix 81
81
F
243 261Right-handed alpha
Helix 82
82
F
266 271Right-handed alpha
Helix 83
83
F
289 295Right-handed 310
Helix 84
84
F
304 323Right-handed alpha
Helix 85
85
F
349 359Right-handed alpha
Helix 86
86
G
40 51Right-handed alpha
Helix 87
87
G
51 58Right-handed alpha
Helix 88
88
G
68 80Right-handed alpha
Helix 89
89
G
84 97Right-handed alpha
Helix 90
90
G
115 132Right-handed alpha
Helix 91
91
G
135 146Right-handed alpha
Helix 92
92
G
146 155Right-handed alpha
Helix 93
93
G
157 164Right-handed alpha
Helix 94
94
G
232 239Right-handed alpha
Helix 95
95
G
243 261Right-handed alpha
Helix 96
96
G
266 271Right-handed alpha
Helix 97
97
G
289 295Right-handed 310
Helix 98
98
G
304 323Right-handed alpha
Helix 99
99
G
349 359Right-handed alpha
Helix 100
100
H
40 50Right-handed alpha
Helix 101
101
H
51 58Right-handed alpha
Helix 102
102
H
68 80Right-handed alpha
Helix 103
103
H
84 97Right-handed alpha
Helix 104
104
H
115 132Right-handed alpha
Helix 105
105
H
135 146Right-handed alpha
Helix 106
106
H
147 155Right-handed alpha
Helix 107
107
H
157 164Right-handed alpha
Helix 108
108
H
171 176Right-handed alpha
Helix 109
109
H
232 239Right-handed alpha
Helix 110
110
H
243 261Right-handed alpha
Helix 111
111
H
266 271Right-handed alpha
Helix 112
112
H
289 295Right-handed 310
Helix 113
113
H
304 323Right-handed alpha
Helix 114
114
H
349 359Right-handed alpha
Helix 115
115
I
40 50Right-handed alpha
Helix 116
116
I
51 58Right-handed alpha
Helix 117
117
I
157 164Right-handed alpha
Helix 118
118
I
232 239Right-handed alpha
Helix 119
119
I
243 261Right-handed alpha
Helix 120
120
I
266 271Right-handed alpha
Helix 121
121
I
289 295Right-handed 310
Helix 122
122
I
304 323Right-handed alpha
Helix 123
123
I
349 359Right-handed alpha
Helix 124
124
J
32 44Right-handed alpha
Helix 125
125
J
50 60Right-handed alpha
Helix 126
126
J
129 139Right-handed alpha
Helix 127
127
J
168 174Right-handed alpha
Helix 128
128
K
10 13Right-handed 310
Helix 129
129
K
15 25Right-handed alpha
Helix 130
130
K
118 134Right-handed alpha
Helix 131
131
K
172 182Right-handed alpha
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There are 29 sheets in PDB entry 4QYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 23first strand
Strand 2
A
7 13anti-parallel
Strand 3
A
34 35anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 176first strand
Strand 2
A
343 350anti-parallel
Strand 3
A
360 367anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 222first strand
Strand 2
A
272 274parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 240first strand
Strand 2
A
265 267anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
293 297first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
324 325anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
73 74first strand
Strand 2
B
127 128parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
73 74first strand
Strand 2
C
127 128parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 30first strand
Strand 2
D
35 39anti-parallel
Strand 3
D
187 189anti-parallel
Strand 4
D
222 231anti-parallel
Strand 5
D
182 184anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 30first strand
Strand 2
D
35 39anti-parallel
Strand 3
D
187 189anti-parallel
Strand 4
D
222 231anti-parallel
Strand 5
D
4 13anti-parallel
Strand 6
D
278 284anti-parallel
Strand 7
D
328 332anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
63 67first strand
Strand 2
D
107 114anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
27 30first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
187 189anti-parallel
Strand 4
E
213 231anti-parallel
Strand 5
E
196 202anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
182 184first strand
Strand 2
E
213 231anti-parallel
Strand 3
E
4 16anti-parallel
Strand 4
E
276 284anti-parallel
Strand 5
E
329 333anti-parallel
Strand 6
E
345 347parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
63 67first strand
Strand 2
E
107 114anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
28 31first strand
Strand 2
F
34 39anti-parallel
Strand 3
F
182 189anti-parallel
Strand 4
F
211 231anti-parallel
Strand 5
F
196 203anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
28 31first strand
Strand 2
F
34 39anti-parallel
Strand 3
F
182 189anti-parallel
Strand 4
F
211 231anti-parallel
Strand 5
F
4 16anti-parallel
Strand 6
F
276 284anti-parallel
Strand 7
F
329 333anti-parallel
Strand 8
F
345 347parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
63 67first strand
Strand 2
F
107 114anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
38 39first strand
Strand 2
G
182 189anti-parallel
Strand 3
G
211 231anti-parallel
Strand 4
G
196 203anti-parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
38 39first strand
Strand 2
G
182 189anti-parallel
Strand 3
G
211 231anti-parallel
Strand 4
G
4 16anti-parallel
Strand 5
G
278 284anti-parallel
Strand 6
G
329 333anti-parallel
Strand 7
G
345 346parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
30 31first strand
Strand 2
G
34 35anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
63 67first strand
Strand 2
G
107 114anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
27 31first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
182 189anti-parallel
Strand 4
H
213 231anti-parallel
Strand 5
H
196 202anti-parallel
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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
27 31first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
182 189anti-parallel
Strand 4
H
213 231anti-parallel
Strand 5
H
4 16anti-parallel
Strand 6
H
276 284anti-parallel
Strand 7
H
329 333anti-parallel
Strand 8
H
345 347parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
63 67first strand
Strand 2
H
107 114anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
28 31first strand
Strand 2
I
34 39anti-parallel
Strand 3
I
187 189anti-parallel
Strand 4
I
211 231anti-parallel
Strand 5
I
196 203anti-parallel
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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
182 184first strand
Strand 2
I
211 231anti-parallel
Strand 3
I
4 16anti-parallel
Strand 4
I
278 284anti-parallel
Strand 5
I
329 333anti-parallel
Strand 6
I
345 347parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
4 14first strand
Strand 2
J
105 122anti-parallel
Strand 3
J
80 87anti-parallel
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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
24 25first strand
Strand 2
J
105 122parallel
Strand 3
J
61 67anti-parallel
Strand 4
J
181 183anti-parallel
Strand 5
J
211 216anti-parallel
Strand 6
J
192 196anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
37 46first strand
Strand 2
K
49 56anti-parallel
Strand 3
K
3 8anti-parallel
Strand 4
K
66 72anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
136 140first strand
Strand 2
K
162 168anti-parallel
Strand 3
K
83 89anti-parallel
Strand 4
K
193 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il