Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8A entry

There are 7 chains in PDB entry 4R8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 16VAL 553
B
A -2 C 12
C
G 1 G 10
D
G 1 A 21
F
LEU 16VAL 553
G
A -2 C 12
H
G 1 G 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4R8A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 37Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
77 79Right-handed 310
Helix 5
5
A
86 91Right-handed alpha
Helix 6
6
A
91 97Right-handed alpha
Helix 7
7
A
107 115Right-handed alpha
Helix 8
8
A
116 124Right-handed alpha
Helix 9
9
A
125 128Right-handed 310
Helix 10
10
A
134 143Right-handed alpha
Helix 11
11
A
152 156Right-handed alpha
Helix 12
12
A
168 180Right-handed alpha
Helix 13
13
A
187 195Right-handed alpha
Helix 14
14
A
214 232Right-handed alpha
Helix 15
15
A
236 244Right-handed alpha
Helix 16
16
A
251 272Right-handed alpha
Helix 17
17
A
274 283Right-handed alpha
Helix 18
18
A
289 301Right-handed alpha
Helix 19
19
A
303 317Right-handed alpha
Helix 20
20
A
320 338Right-handed alpha
Helix 21
21
A
366 375Right-handed alpha
Helix 22
22
A
387 398Right-handed alpha
Helix 23
23
A
398 403Right-handed alpha
Helix 24
24
A
427 429Right-handed 310
Helix 25
25
A
430 438Right-handed alpha
Helix 26
26
A
444 458Right-handed alpha
Helix 27
27
A
471 482Right-handed alpha
Helix 28
28
A
483 497Right-handed alpha
Helix 29
29
A
531 544Right-handed alpha
Helix 30
30
F
20 37Right-handed alpha
Helix 31
31
F
42 54Right-handed alpha
Helix 32
32
F
56 69Right-handed alpha
Helix 33
33
F
77 79Right-handed 310
Helix 34
34
F
86 91Right-handed alpha
Helix 35
35
F
91 97Right-handed alpha
Helix 36
36
F
107 115Right-handed alpha
Helix 37
37
F
116 124Right-handed alpha
Helix 38
38
F
125 128Right-handed 310
Helix 39
39
F
134 143Right-handed alpha
Helix 40
40
F
152 156Right-handed alpha
Helix 41
41
F
168 180Right-handed alpha
Helix 42
42
F
187 195Right-handed alpha
Helix 43
43
F
214 232Right-handed alpha
Helix 44
44
F
236 244Right-handed alpha
Helix 45
45
F
251 272Right-handed alpha
Helix 46
46
F
274 283Right-handed alpha
Helix 47
47
F
289 301Right-handed alpha
Helix 48
48
F
303 317Right-handed alpha
Helix 49
49
F
320 338Right-handed alpha
Helix 50
50
F
366 375Right-handed alpha
Helix 51
51
F
387 398Right-handed alpha
Helix 52
52
F
398 403Right-handed alpha
Helix 53
53
F
427 429Right-handed 310
Helix 54
54
F
430 438Right-handed alpha
Helix 55
55
F
444 458Right-handed alpha
Helix 56
56
F
471 482Right-handed alpha
Helix 57
57
F
483 497Right-handed alpha
Helix 58
58
F
531 544Right-handed alpha
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There are 6 sheets in PDB entry 4R8A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 75first strand
Strand 2
A
163 166anti-parallel
Strand 3
A
100 101anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 106first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
352 355first strand
Strand 2
A
548 552parallel
Strand 3
A
517 524parallel
Strand 4
A
508 512anti-parallel
Strand 5
A
381 384anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
73 75first strand
Strand 2
F
163 166anti-parallel
Strand 3
F
100 101anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
105 106first strand
Strand 2
F
150 151anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
352 355first strand
Strand 2
F
548 552parallel
Strand 3
F
517 524parallel
Strand 4
F
508 512anti-parallel
Strand 5
F
381 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il