Analysis of interatomic Contacts of Structural Units in PDB entry:
4RA4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RA4 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4RA4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 332ARG 496
A
PHE 498LEU 637
A
PRO 639PHE 656
A
TYR 658PRO 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4RA4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
335 337Right-handed 310
Helix 2
2
A
372 378Right-handed alpha
Helix 3
3
A
380 393Right-handed alpha
Helix 4
4
A
424 433Right-handed alpha
Helix 5
5
A
436 457Right-handed alpha
Helix 6
6
A
465 467Right-handed 310
Helix 7
7
A
501 505Right-handed 310
Helix 8
8
A
506 511Right-handed alpha
Helix 9
9
A
517 534Right-handed alpha
Helix 10
10
A
542 553Right-handed alpha
Helix 11
11
A
562 573Right-handed alpha
Helix 12
12
A
576 580Right-handed 310
Helix 13
13
A
586 594Right-handed alpha
Helix 14
14
A
595 598Right-handed 310
Helix 15
15
A
601 607Right-handed alpha
Helix 16
16
A
641 647Right-handed alpha
Helix 17
17
A
649 654Right-handed 310
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There are 2 sheets in PDB entry 4RA4. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
339 347first strand
Strand 2
A
352 358anti-parallel
Strand 3
A
364 371anti-parallel
Strand 4
A
412 417anti-parallel
Strand 5
A
403 408anti-parallel
Strand 6
A
658 659anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
469 471first strand
Strand 2
A
477 479anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il