Analysis of interatomic Contacts of Structural Units in PDB entry:
4RM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RM8 entry

There are 2 chains in PDB entry 4RM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 586
B
 LYS 3LEU 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4RM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 38Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
88 93Right-handed alpha
Helix 5
5
A
95 112Right-handed alpha
Helix 6
6
A
118 135Right-handed alpha
Helix 7
7
A
154 160Right-handed alpha
Helix 8
8
A
164 179Right-handed alpha
Helix 9
9
A
183 196Right-handed alpha
Helix 10
10
A
273 296Right-handed alpha
Helix 11
11
A
519 524Right-handed alpha
Helix 12
12
A
524 540Right-handed alpha
Helix 13
13
A
543 547Right-handed 310
Helix 14
14
A
548 560Right-handed alpha
Helix 15
15
A
563 572Right-handed alpha
Helix 16
16
A
575 586Right-handed alpha
Helix 17
17
B
25 38Right-handed alpha
Helix 18
18
B
41 43Right-handed 310
Helix 19
19
B
64 68Right-handed 310
Helix 20
20
B
88 93Right-handed alpha
Helix 21
21
B
95 112Right-handed alpha
Helix 22
22
B
118 135Right-handed alpha
Helix 23
23
B
154 160Right-handed alpha
Helix 24
24
B
164 179Right-handed alpha
Helix 25
25
B
183 196Right-handed alpha
Helix 26
26
B
273 294Right-handed alpha
Helix 27
27
B
519 524Right-handed alpha
Helix 28
28
B
524 540Right-handed alpha
Helix 29
29
B
541 542Right-handed 310
Helix 30
30
B
543 547Right-handed 310
Helix 31
31
B
548 560Right-handed alpha
Helix 32
32
B
563 572Right-handed alpha
Helix 33
33
B
575 586Right-handed alpha
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There are 6 sheets in PDB entry 4RM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
76 82parallel
Strand 4
A
45 50anti-parallel
Strand 5
A
56 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
238 241anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 251first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
267 270anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
5 11anti-parallel
Strand 3
B
76 82parallel
Strand 4
B
45 50anti-parallel
Strand 5
B
56 58anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
215 220anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
238 241anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 251first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
267 270anti-parallel
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