Analysis of interatomic Contacts of Structural Units in PDB entry:
4RWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RWF entry

There are 2 chains in PDB entry 4RWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 2129
B
 ASP 35TYR 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4RWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 34Right-handed alpha
Helix 2
2
A
44 55Right-handed alpha
Helix 3
3
A
68 75Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
92 99Right-handed alpha
Helix 6
6
A
133 143Right-handed alpha
Helix 7
7
A
155 166Right-handed alpha
Helix 8
8
A
187 203Right-handed alpha
Helix 9
9
A
211 221Right-handed alpha
Helix 10
10
A
230 232Right-handed 310
Helix 11
11
A
233 241Right-handed alpha
Helix 12
12
A
274 285Right-handed alpha
Helix 13
13
A
288 299Right-handed alpha
Helix 14
14
A
306 314Right-handed alpha
Helix 15
15
A
316 329Right-handed alpha
Helix 16
16
A
337 354Right-handed alpha
Helix 17
17
A
358 1055Right-handed alpha
Helix 18
18
A
1060 1077Right-handed alpha
Helix 19
19
A
1078 1083Right-handed 310
Helix 20
20
A
1085 1107Right-handed alpha
Helix 21
21
A
1113 1127Right-handed alpha
Helix 22
22
A
2035 2055Right-handed alpha
Helix 23
23
B
43 48Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4RWF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
108 113anti-parallel
Strand 6
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
9 12parallel
Strand 3
A
61 65parallel
Strand 4
A
260 268anti-parallel
Strand 5
A
330 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
224 229parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
244 247anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2064 2065first strand
Strand 2
A
2078 2079anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2068 2069first strand
Strand 2
A
2074 2075anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2082 2087first strand
Strand 2
A
2100 2105anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il