Analysis of interatomic Contacts of Structural Units in PDB entry:
4UUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4UUV entry

There are 24 chains in PDB entry 4UUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 339ASP 434
B
A 1 G 10
C
A 2 C 11
D
ALA 340ASP 434
E
A 1 G 10
F
A 1 C 10
G
ALA 340ASP 434
H
A 1 G 10
I
A 1 C 10
J
LEU 341ASP 434
K
A 1 G 10
L
A 1 C 10
M
LEU 341ASP 434
N
A 1 G 10
O
A 1 C 10
P
GLY 339ASP 434
Q
A 1 G 10
R
A 1 C 10
S
ALA 340ASP 434
T
A 1 G 10
U
A 1 C 10
V
LEU 341ASP 434
W
A 1 G 10
X
A 1 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4UUV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
342 353Right-handed alpha
Helix 2
2
A
354 357Right-handed 310
Helix 3
3
A
373 385Right-handed alpha
Helix 4
4
A
391 405Right-handed alpha
Helix 5
5
A
423 432Right-handed alpha
Helix 6
6
D
342 353Right-handed alpha
Helix 7
7
D
354 357Right-handed 310
Helix 8
8
D
373 385Right-handed alpha
Helix 9
9
D
391 405Right-handed alpha
Helix 10
10
D
423 432Right-handed alpha
Helix 11
11
G
342 353Right-handed alpha
Helix 12
12
G
354 357Right-handed 310
Helix 13
13
G
373 385Right-handed alpha
Helix 14
14
G
391 405Right-handed alpha
Helix 15
15
G
423 432Right-handed alpha
Helix 16
16
J
342 353Right-handed alpha
Helix 17
17
J
354 357Right-handed 310
Helix 18
18
J
373 385Right-handed alpha
Helix 19
19
J
391 405Right-handed alpha
Helix 20
20
J
423 432Right-handed alpha
Helix 21
21
M
342 352Right-handed alpha
Helix 22
22
M
353 357Right-handed 310
Helix 23
23
M
373 385Right-handed alpha
Helix 24
24
M
391 405Right-handed alpha
Helix 25
25
M
423 432Right-handed alpha
Helix 26
26
P
342 353Right-handed alpha
Helix 27
27
P
354 357Right-handed 310
Helix 28
28
P
373 385Right-handed alpha
Helix 29
29
P
391 406Right-handed alpha
Helix 30
30
P
423 432Right-handed alpha
Helix 31
31
S
342 352Right-handed alpha
Helix 32
32
S
353 357Right-handed 310
Helix 33
33
S
373 385Right-handed alpha
Helix 34
34
S
391 405Right-handed alpha
Helix 35
35
S
423 432Right-handed alpha
Helix 36
36
V
342 353Right-handed alpha
Helix 37
37
V
354 357Right-handed 310
Helix 38
38
V
373 385Right-handed alpha
Helix 39
39
V
391 402Right-handed alpha
Helix 40
40
V
423 432Right-handed alpha
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There are 8 sheets in PDB entry 4UUV. Click on sheet of interest to get list of strands forming it: AA, A, GA, JA, MA, PA, SA, VA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
368 370anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
408 410anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
361 362first strand
Strand 2
D
368 370anti-parallel
Strand 3
D
417 420anti-parallel
Strand 4
D
408 410anti-parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
361 362first strand
Strand 2
G
368 370anti-parallel
Strand 3
G
417 420anti-parallel
Strand 4
G
408 410anti-parallel
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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
361 362first strand
Strand 2
J
368 370anti-parallel
Strand 3
J
417 420anti-parallel
Strand 4
J
408 410anti-parallel
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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
361 362first strand
Strand 2
M
368 370anti-parallel
Strand 3
M
417 420anti-parallel
Strand 4
M
408 410anti-parallel
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There are 4 strands in PA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
361 362first strand
Strand 2
P
368 370anti-parallel
Strand 3
P
417 420anti-parallel
Strand 4
P
408 410anti-parallel
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There are 4 strands in SA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
361 362first strand
Strand 2
S
368 370anti-parallel
Strand 3
S
417 420anti-parallel
Strand 4
S
408 410anti-parallel
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There are 4 strands in VA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
361 362first strand
Strand 2
V
368 370anti-parallel
Strand 3
V
417 420anti-parallel
Strand 4
V
408 410anti-parallel
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