Analysis of interatomic Contacts of Structural Units in PDB entry:
4V06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V06 entry

There are 2 chains in PDB entry 4V06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 142ILE 490
B
 ASP 150ILE 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 4V06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 150Right-handed alpha
Helix 2
2
A
158 160Right-handed 310
Helix 3
3
A
161 166Right-handed alpha
Helix 4
4
A
184 200Right-handed alpha
Helix 5
5
A
213 229Right-handed alpha
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
236 250Right-handed alpha
Helix 8
8
A
259 271Right-handed alpha
Helix 9
9
A
283 292Right-handed alpha
Helix 10
10
A
315 323Right-handed alpha
Helix 11
11
A
323 328Right-handed alpha
Helix 12
12
A
329 344Right-handed alpha
Helix 13
13
A
347 360Right-handed alpha
Helix 14
14
A
377 383Right-handed alpha
Helix 15
15
A
383 391Right-handed alpha
Helix 16
16
A
401 406Right-handed alpha
Helix 17
17
A
424 436Right-handed alpha
Helix 18
18
A
459 489Right-handed alpha
Helix 19
19
B
158 160Right-handed 310
Helix 20
20
B
161 166Right-handed alpha
Helix 21
21
B
184 201Right-handed alpha
Helix 22
22
B
213 228Right-handed alpha
Helix 23
23
B
230 235Right-handed alpha
Helix 24
24
B
236 249Right-handed alpha
Helix 25
25
B
259 269Right-handed alpha
Helix 26
26
B
283 292Right-handed alpha
Helix 27
27
B
315 323Right-handed alpha
Helix 28
28
B
323 328Right-handed alpha
Helix 29
29
B
329 344Right-handed alpha
Helix 30
30
B
347 360Right-handed alpha
Helix 31
31
B
383 391Right-handed alpha
Helix 32
32
B
401 406Right-handed alpha
Helix 33
33
B
424 437Right-handed alpha
Helix 34
34
B
459 489Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4V06. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
280 282anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
295 298parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
419 422parallel
Strand 4
A
397 399parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
453 457anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
280 282anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
295 298parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
366 368anti-parallel
Strand 3
B
419 422parallel
Strand 4
B
397 399parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
453 457anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il