Analysis of interatomic Contacts of Structural Units in PDB entry:
4V0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4V0P entry

There is 1 chain in PDB entry 4V0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 102ARG 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4V0P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
102 127Right-handed alpha
Helix 2
2
A
132 139Right-handed alpha
Helix 3
3
A
140 145Right-handed 310
Helix 4
4
A
146 163Right-handed alpha
Helix 5
5
A
182 184Right-handed 310
Helix 6
6
A
198 213Right-handed alpha
Helix 7
7
A
218 226Right-handed alpha
Helix 8
8
A
227 232Right-handed 310
Helix 9
9
A
241 253Right-handed alpha
Helix 10
10
A
274 281Right-handed alpha
Helix 11
11
A
282 293Right-handed alpha
Helix 12
12
A
303 307Right-handed 310
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There are 2 sheets in PDB entry 4V0P. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
130 131first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
164 170anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 217first strand
Strand 2
A
269 273anti-parallel
Strand 3
A
256 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il