Analysis of interatomic Contacts of Structural Units in PDB entry:
4WFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4WFH entry

There are 6 chains in PDB entry 4WFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 28VAL 286
B
ARG 28SER 274
D
GLN 1ASN 211
E
GLU 1ASP 217
F
GLN 1ASN 211
G
GLU 1SER 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4WFH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
28 55Right-handed alpha
Helix 2
AA2
A
56 58Right-handed 310
Helix 3
AA3
A
59 76Right-handed alpha
Helix 4
AA4
A
80 97Right-handed alpha
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
139 186Right-handed alpha
Helix 7
AA7
A
189 210Right-handed alpha
Helix 8
AA8
A
210 222Right-handed alpha
Helix 9
AA9
A
224 237Right-handed alpha
Helix 10
AB1
A
256 286Right-handed alpha
Helix 11
AB2
B
29 76Right-handed alpha
Helix 12
AB3
B
80 97Right-handed alpha
Helix 13
AB4
B
115 128Right-handed alpha
Helix 14
AB5
B
139 186Right-handed alpha
Helix 15
AB6
B
189 210Right-handed alpha
Helix 16
AB7
B
210 222Right-handed alpha
Helix 17
AB8
B
224 237Right-handed alpha
Helix 18
AB9
B
256 274Right-handed alpha
Helix 19
AC1
D
78 82Right-handed 310
Helix 20
AC2
D
120 125Right-handed alpha
Helix 21
AC3
D
182 188Right-handed alpha
Helix 22
AC4
E
28 32Right-handed 310
Helix 23
AC5
E
62 65Right-handed 310
Helix 24
AC6
E
87 91Right-handed 310
Helix 25
AC7
E
159 161Right-handed 310
Helix 26
AC8
E
203 206Right-handed 310
Helix 27
AC9
F
78 82Right-handed 310
Helix 28
AD1
F
120 126Right-handed alpha
Helix 29
AD2
F
182 188Right-handed alpha
Helix 30
AD3
G
28 32Right-handed 310
Helix 31
AD4
G
62 65Right-handed 310
Helix 32
AD5
G
87 91Right-handed 310
Helix 33
AD6
G
159 161Right-handed 310
Helix 34
AD7
G
203 206Right-handed 310
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There are 22 sheets in PDB entry 4WFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 5first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
69 74anti-parallel
Strand 4
D
61 66anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 105parallel
Strand 3
D
83 89anti-parallel
Strand 4
D
33 37anti-parallel
Strand 5
D
44 48anti-parallel
Strand 6
D
52 53anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 13first strand
Strand 2
D
101 105parallel
Strand 3
D
83 89anti-parallel
Strand 4
D
96 97anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
113 117first strand
Strand 2
D
128 138anti-parallel
Strand 3
D
172 181anti-parallel
Strand 4
D
158 162anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 154first strand
Strand 2
D
143 149anti-parallel
Strand 3
D
190 197anti-parallel
Strand 4
D
204 209anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
3 6first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
110 114parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 12first strand
Strand 2
E
110 114parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
138 148anti-parallel
Strand 3
E
177 187anti-parallel
Strand 4
E
166 168anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
123 127first strand
Strand 2
E
138 148anti-parallel
Strand 3
E
177 187anti-parallel
Strand 4
E
172 174anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
154 157first strand
Strand 2
E
197 202anti-parallel
Strand 3
E
207 212anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
4 5first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
69 74anti-parallel
Strand 4
F
61 66anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 13first strand
Strand 2
F
101 105parallel
Strand 3
F
83 89anti-parallel
Strand 4
F
33 37anti-parallel
Strand 5
F
44 48anti-parallel
Strand 6
F
52 53anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 13first strand
Strand 2
F
101 105parallel
Strand 3
F
83 89anti-parallel
Strand 4
F
96 97anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
113 117first strand
Strand 2
F
128 138anti-parallel
Strand 3
F
172 181anti-parallel
Strand 4
F
158 162anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
152 154first strand
Strand 2
F
144 149anti-parallel
Strand 3
F
190 196anti-parallel
Strand 4
F
204 209anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 6first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
78 83anti-parallel
Strand 4
G
68 73anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 12first strand
Strand 2
G
110 114parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
34 39anti-parallel
Strand 5
G
45 51anti-parallel
Strand 6
G
58 60anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 12first strand
Strand 2
G
110 114parallel
Strand 3
G
92 98anti-parallel
Strand 4
G
105 106anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
123 127first strand
Strand 2
G
138 148anti-parallel
Strand 3
G
177 187anti-parallel
Strand 4
G
166 168anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
123 127first strand
Strand 2
G
138 148anti-parallel
Strand 3
G
177 187anti-parallel
Strand 4
G
172 174anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
154 157first strand
Strand 2
G
197 202anti-parallel
Strand 3
G
207 212anti-parallel
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