Analysis of interatomic Contacts of Structural Units in PDB entry:
4WGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WGK entry

There are 2 chains in PDB entry 4WGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 100	ILE 780
B	PHE 99	LYS 723

There are 36 helices in PDB entry 4WGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	164	180	Right-handed alpha
Helix 2	AA2	A	205	213	Right-handed alpha
Helix 3	AA3	A	216	236	Right-handed alpha
Helix 4	AA4	A	258	263	Right-handed alpha
Helix 5	AA5	A	266	271	Right-handed alpha
Helix 6	AA6	A	316	331	Right-handed alpha
Helix 7	AA7	A	379	382	Right-handed 310
Helix 8	AA8	A	392	414	Right-handed alpha
Helix 9	AA9	A	455	457	Right-handed 310
Helix 10	AB1	A	477	488	Right-handed alpha
Helix 11	AB2	A	492	500	Right-handed alpha
Helix 12	AB3	A	507	511	Right-handed 310
Helix 13	AB4	A	542	560	Right-handed alpha
Helix 14	AB5	A	582	589	Right-handed alpha
Helix 15	AB6	A	590	595	Right-handed alpha
Helix 16	AB7	A	601	619	Right-handed alpha
Helix 17	AB8	A	621	625	Right-handed 310
Helix 18	AB9	A	680	685	Right-handed 310
Helix 19	AC1	B	164	180	Right-handed alpha
Helix 20	AC2	B	205	213	Right-handed alpha
Helix 21	AC3	B	216	237	Right-handed alpha
Helix 22	AC4	B	258	263	Right-handed alpha
Helix 23	AC5	B	266	271	Right-handed alpha
Helix 24	AC6	B	316	331	Right-handed alpha
Helix 25	AC7	B	380	382	Right-handed 310
Helix 26	AC8	B	392	414	Right-handed alpha
Helix 27	AC9	B	455	457	Right-handed 310
Helix 28	AD1	B	477	488	Right-handed alpha
Helix 29	AD2	B	492	500	Right-handed alpha
Helix 30	AD3	B	507	511	Right-handed 310
Helix 31	AD4	B	542	560	Right-handed alpha
Helix 32	AD5	B	582	589	Right-handed alpha
Helix 33	AD6	B	590	595	Right-handed alpha
Helix 34	AD7	B	601	619	Right-handed alpha
Helix 35	AD8	B	621	625	Right-handed 310
Helix 36	AD9	B	680	685	Right-handed 310

There are 26 sheets in PDB entry 4WGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	192	first strand
Strand 2	A	153	158	parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	102	110	anti-parallel
Strand 5	A	239	249	anti-parallel
Strand 6	A	280	288	anti-parallel
Strand 7	A	293	299	anti-parallel
Strand 8	A	342	346	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	192	first strand
Strand 2	A	153	158	parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	102	110	anti-parallel
Strand 5	A	239	249	anti-parallel
Strand 6	A	417	419	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	116	121	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	313	314	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	116	121	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	717	723	anti-parallel
Strand 5	A	729	736	anti-parallel
Strand 6	A	671	677	anti-parallel
Strand 7	A	658	660	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	353	354	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	384	386	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	431	first strand
Strand 2	A	521	529	anti-parallel
Strand 3	A	532	536	anti-parallel
Strand 4	A	566	570	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	A	444	446	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	504	506	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	463	464	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	579	580	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	A	775	778	parallel
Strand 3	A	744	756	anti-parallel
Strand 4	A	694	700	anti-parallel
Strand 5	A	705	711	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	A	775	778	parallel
Strand 3	A	744	756	anti-parallel
Strand 4	A	764	771	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	153	158	parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	102	110	anti-parallel
Strand 5	B	239	249	anti-parallel
Strand 6	B	280	288	anti-parallel
Strand 7	B	293	299	anti-parallel
Strand 8	B	342	346	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	153	158	parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	102	110	anti-parallel
Strand 5	B	239	249	anti-parallel
Strand 6	B	417	419	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	313	314	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	717	723	anti-parallel
Strand 5	B	729	736	anti-parallel
Strand 6	B	671	677	anti-parallel
Strand 7	B	658	660	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	353	354	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	384	386	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	431	first strand
Strand 2	B	521	529	anti-parallel
Strand 3	B	532	536	anti-parallel
Strand 4	B	566	570	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	438	first strand
Strand 2	B	444	446	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	504	506	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	463	464	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	541	first strand
Strand 2	B	579	580	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	775	778	parallel
Strand 3	B	744	756	anti-parallel
Strand 4	B	694	700	anti-parallel
Strand 5	B	705	711	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	B	775	778	parallel
Strand 3	B	744	756	anti-parallel
Strand 4	B	764	771	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WGK