Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4WJN entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 4WJN
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLU 18 | GLN 94 |
B
|
ALA 7 | ILE 14 |
B
|
ASN 24 | TYR 29 |
Back to top of page
There are 3
helices in PDB entry 4WJN. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 44 |
56 | Right-handed alpha |
Helix 2 |
AA2 | A
| 58 |
60 | Right-handed 310 |
Helix 3 |
AA3 | A
| 76 |
81 | Right-handed alpha |
Back to top of page
There is
1 sheet (AA1) in PDB entry 4WJN.
There are 6
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il