Analysis of interatomic Contacts of Structural Units in PDB entry:
4WMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4WMJ entry

There are 3 chains in PDB entry 4WMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	PHE 556
B	GLU 2	PHE 556
C	PRO 3	SER 164

There are143 helices in PDB entry 4WMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	9	Right-handed 310
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	25	27	Right-handed 310
Helix 4	AA4	A	28	36	Right-handed alpha
Helix 5	AA5	A	38	43	Right-handed alpha
Helix 6	AA6	A	65	79	Right-handed alpha
Helix 7	AA7	A	80	90	Right-handed alpha
Helix 8	AA8	A	103	108	Right-handed alpha
Helix 9	AA9	A	122	142	Right-handed alpha
Helix 10	AB1	A	161	164	Right-handed 310
Helix 11	AB2	A	165	175	Right-handed alpha
Helix 12	AB3	A	176	179	Right-handed 310
Helix 13	AB4	A	191	200	Right-handed alpha
Helix 14	AB5	A	201	202	Right-handed 310
Helix 15	AB6	A	203	205	Right-handed 310
Helix 16	AB7	A	218	237	Right-handed alpha
Helix 17	AB8	A	238	244	Right-handed 310
Helix 18	AB9	A	252	260	Right-handed alpha
Helix 19	AC1	A	262	264	Right-handed 310
Helix 20	AC2	A	274	278	Right-handed 310
Helix 21	AC3	A	281	283	Right-handed 310
Helix 22	AC4	A	284	292	Right-handed alpha
Helix 23	AC5	A	292	313	Right-handed alpha
Helix 24	AC6	A	314	317	Right-handed 310
Helix 25	AC7	A	318	333	Right-handed alpha
Helix 26	AC8	A	345	349	Right-handed 310
Helix 27	AC9	A	350	364	Right-handed alpha
Helix 28	AD1	A	390	401	Right-handed alpha
Helix 29	AD2	A	419	421	Right-handed 310
Helix 30	AD3	A	422	442	Right-handed alpha
Helix 31	AD4	A	444	455	Right-handed alpha
Helix 32	AD5	A	458	466	Right-handed alpha
Helix 33	AD6	A	467	470	Right-handed 310
Helix 34	AD7	A	486	509	Right-handed alpha
Helix 35	AD8	A	515	517	Right-handed 310
Helix 36	AD9	A	518	529	Right-handed alpha
Helix 37	AE1	A	530	533	Right-handed 310
Helix 38	AE2	A	542	555	Right-handed alpha
Helix 39	AE3	B	6	9	Right-handed 310
Helix 40	AE4	B	10	24	Right-handed alpha
Helix 41	AE5	B	28	36	Right-handed alpha
Helix 42	AE6	B	38	43	Right-handed alpha
Helix 43	AE7	B	65	79	Right-handed alpha
Helix 44	AE8	B	80	90	Right-handed alpha
Helix 45	AE9	B	103	108	Right-handed alpha
Helix 46	AF1	B	122	142	Right-handed alpha
Helix 47	AF2	B	161	164	Right-handed 310
Helix 48	AF3	B	165	175	Right-handed alpha
Helix 49	AF4	B	176	179	Right-handed 310
Helix 50	AF5	B	191	200	Right-handed alpha
Helix 51	AF6	B	218	237	Right-handed alpha
Helix 52	AF7	B	238	240	Right-handed 310
Helix 53	AF8	B	241	245	Right-handed alpha
Helix 54	AF9	B	252	260	Right-handed alpha
Helix 55	AG1	B	262	264	Right-handed 310
Helix 56	AG2	B	274	278	Right-handed 310
Helix 57	AG3	B	281	283	Right-handed 310
Helix 58	AG4	B	284	292	Right-handed alpha
Helix 59	AG5	B	292	313	Right-handed alpha
Helix 60	AG6	B	314	317	Right-handed 310
Helix 61	AG7	B	318	333	Right-handed alpha
Helix 62	AG8	B	345	349	Right-handed 310
Helix 63	AG9	B	350	364	Right-handed alpha
Helix 64	AH1	B	389	393	Right-handed 310
Helix 65	AH2	B	394	401	Right-handed alpha
Helix 66	AH3	B	419	421	Right-handed 310
Helix 67	AH4	B	422	442	Right-handed alpha
Helix 68	AH5	B	444	455	Right-handed alpha
Helix 69	AH6	B	458	466	Right-handed alpha
Helix 70	AH7	B	467	470	Right-handed 310
Helix 71	AH8	B	486	509	Right-handed alpha
Helix 72	AH9	B	515	517	Right-handed 310
Helix 73	AI1	B	518	534	Right-handed alpha
Helix 74	AI2	B	542	555	Right-handed alpha
Helix 75	AI3	C	6	9	Right-handed 310
Helix 76	AI4	C	10	24	Right-handed alpha
Helix 77	AI5	C	28	36	Right-handed alpha
Helix 78	AI6	C	38	43	Right-handed alpha
Helix 79	AI7	C	65	79	Right-handed alpha
Helix 80	AI8	C	80	90	Right-handed alpha
Helix 81	AI9	C	103	108	Right-handed alpha
Helix 82	AJ1	C	122	142	Right-handed alpha
Helix 83	AJ2	C	161	164	Right-handed 310
Helix 84	AJ3	C	165	175	Right-handed alpha
Helix 85	AJ4	C	176	179	Right-handed 310
Helix 86	AJ5	C	191	200	Right-handed alpha
Helix 87	AJ6	C	218	237	Right-handed alpha
Helix 88	AJ7	C	238	244	Right-handed 310
Helix 89	AJ8	C	252	260	Right-handed alpha
Helix 90	AJ9	C	262	264	Right-handed 310
Helix 91	AK1	C	274	278	Right-handed 310
Helix 92	AK2	C	281	283	Right-handed 310
Helix 93	AK3	C	284	292	Right-handed alpha
Helix 94	AK4	C	292	313	Right-handed alpha
Helix 95	AK5	C	314	317	Right-handed 310
Helix 96	AK6	C	318	333	Right-handed alpha
Helix 97	AK7	C	345	349	Right-handed 310
Helix 98	AK8	C	350	364	Right-handed alpha
Helix 99	AK9	C	390	401	Right-handed alpha
Helix 100	AL1	C	419	421	Right-handed 310
Helix 101	AL2	C	422	442	Right-handed alpha
Helix 102	AL3	C	444	455	Right-handed alpha
Helix 103	AL4	C	458	466	Right-handed alpha
Helix 104	AL5	C	467	470	Right-handed 310
Helix 105	AL6	C	486	509	Right-handed alpha
Helix 106	AL7	C	515	517	Right-handed 310
Helix 107	AL8	C	518	529	Right-handed alpha
Helix 108	AL9	C	530	533	Right-handed 310
Helix 109	AM1	C	542	555	Right-handed alpha
Helix 110	AM2	D	6	9	Right-handed 310
Helix 111	AM3	D	10	24	Right-handed alpha
Helix 112	AM4	D	28	36	Right-handed alpha
Helix 113	AM5	D	38	43	Right-handed alpha
Helix 114	AM6	D	65	79	Right-handed alpha
Helix 115	AM7	D	80	90	Right-handed alpha
Helix 116	AM8	D	103	108	Right-handed alpha
Helix 117	AM9	D	122	142	Right-handed alpha
Helix 118	AN1	D	161	164	Right-handed 310
Helix 119	AN2	D	165	175	Right-handed alpha
Helix 120	AN3	D	176	179	Right-handed 310
Helix 121	AN4	D	191	200	Right-handed alpha
Helix 122	AN5	D	218	237	Right-handed alpha
Helix 123	AN6	D	238	244	Right-handed 310
Helix 124	AN7	D	252	260	Right-handed alpha
Helix 125	AN8	D	262	264	Right-handed 310
Helix 126	AN9	D	274	278	Right-handed 310
Helix 127	AO1	D	281	283	Right-handed 310
Helix 128	AO2	D	284	292	Right-handed alpha
Helix 129	AO3	D	292	313	Right-handed alpha
Helix 130	AO4	D	314	317	Right-handed 310
Helix 131	AO5	D	318	333	Right-handed alpha
Helix 132	AO6	D	345	349	Right-handed 310
Helix 133	AO7	D	350	364	Right-handed alpha
Helix 134	AO8	D	390	401	Right-handed alpha
Helix 135	AO9	D	419	421	Right-handed 310
Helix 136	AP1	D	422	442	Right-handed alpha
Helix 137	AP2	D	444	455	Right-handed alpha
Helix 138	AP3	D	458	466	Right-handed alpha
Helix 139	AP4	D	467	470	Right-handed 310
Helix 140	AP5	D	486	508	Right-handed alpha
Helix 141	AP6	D	515	517	Right-handed 310
Helix 142	AP7	D	518	534	Right-handed alpha
Helix 143	AP8	D	542	555	Right-handed alpha

There are 12 sheets in PDB entry 4WMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	54	58	anti-parallel
Strand 3	A	477	482	anti-parallel
Strand 4	A	407	412	parallel
Strand 5	A	338	343	parallel
Strand 6	A	381	383	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	155	159	parallel
Strand 3	A	207	212	parallel
Strand 4	A	246	249	parallel
Strand 5	A	266	267	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	54	58	anti-parallel
Strand 3	B	477	482	anti-parallel
Strand 4	B	407	412	parallel
Strand 5	B	338	343	parallel
Strand 6	B	381	383	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	155	159	parallel
Strand 3	B	207	212	parallel
Strand 4	B	246	249	parallel
Strand 5	B	266	267	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	54	58	anti-parallel
Strand 3	C	477	482	anti-parallel
Strand 4	C	407	412	parallel
Strand 5	C	338	343	parallel
Strand 6	C	381	383	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	155	159	parallel
Strand 3	C	207	212	parallel
Strand 4	C	246	249	parallel
Strand 5	C	266	267	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	54	58	anti-parallel
Strand 3	D	477	482	anti-parallel
Strand 4	D	407	412	parallel
Strand 5	D	338	343	parallel
Strand 6	D	381	383	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	187	first strand
Strand 2	D	155	159	parallel
Strand 3	D	207	212	parallel
Strand 4	D	246	249	parallel
Strand 5	D	266	267	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4WMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4WMJ