Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4Y5V entry

There are 9 chains in PDB entry 4Y5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	GLY 120
B	SER 0	LEU 110
C	PRO 9	ASP 223
D	SER 0	GLY 121
E	SER 0	ALA 111
F	PRO 9	ASP 223
G	SER 0	SER 118
H	SER 0	ALA 111
I	LYS 10	LEU 219

There are 27 helices in PDB entry 4Y5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	101	103	Right-handed 310
Helix 5	AA5	B	81	85	Right-handed 310
Helix 6	AA6	C	10	21	Right-handed alpha
Helix 7	AA7	C	86	90	Right-handed 310
Helix 8	AA8	C	114	118	Right-handed 310
Helix 9	AA9	C	150	152	Right-handed 310
Helix 10	AB1	D	28	32	Right-handed 310
Helix 11	AB2	D	62	65	Right-handed 310
Helix 12	AB3	D	87	91	Right-handed 310
Helix 13	AB4	D	101	103	Right-handed 310
Helix 14	AB5	E	81	85	Right-handed 310
Helix 15	AB6	F	10	21	Right-handed alpha
Helix 16	AB7	F	86	90	Right-handed 310
Helix 17	AB8	F	114	118	Right-handed 310
Helix 18	AB9	F	150	152	Right-handed 310
Helix 19	AC1	G	28	32	Right-handed 310
Helix 20	AC2	G	62	65	Right-handed 310
Helix 21	AC3	G	87	91	Right-handed 310
Helix 22	AC4	G	101	103	Right-handed 310
Helix 23	AC5	H	81	85	Right-handed 310
Helix 24	AC6	I	11	20	Right-handed alpha
Helix 25	AC7	I	86	90	Right-handed 310
Helix 26	AC8	I	114	118	Right-handed 310
Helix 27	AC9	I	150	152	Right-handed 310

There are 30 sheets in PDB entry 4Y5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	112	116	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	50	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	99	101	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	64	69	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	53	59	anti-parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	107	113	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	131	first strand
Strand 2	C	138	143	anti-parallel
Strand 3	C	180	183	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	216	219	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	105	108	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	105	109	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	35	40	anti-parallel
Strand 5	E	47	50	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	105	109	parallel
Strand 3	E	87	93	anti-parallel
Strand 4	E	99	101	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	72	77	anti-parallel
Strand 3	E	64	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	70	74	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	53	59	anti-parallel
Strand 3	F	96	102	anti-parallel
Strand 4	F	107	113	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	131	first strand
Strand 2	F	138	143	anti-parallel
Strand 3	F	180	183	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	174	first strand
Strand 2	F	154	161	anti-parallel
Strand 3	F	191	200	anti-parallel
Strand 4	F	216	219	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	112	116	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	112	116	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	105	108	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	47	50	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	99	101	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	72	77	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	37	42	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	70	72	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	67	first strand
Strand 2	I	53	59	anti-parallel
Strand 3	I	96	102	anti-parallel
Strand 4	I	107	113	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	130	first strand
Strand 2	I	138	143	anti-parallel
Strand 3	I	180	183	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	170	174	first strand
Strand 2	I	154	161	anti-parallel
Strand 3	I	192	200	anti-parallel
Strand 4	I	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4Y5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
4Y5V