Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVD entry

There is 1 chain in PDB entry 4YVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 190ASP 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4YVD

There are 7 sheets in PDB entry 4YVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 200first strand
Strand 2
A
486 491anti-parallel
Strand 3
A
476 481anti-parallel
Strand 4
A
465 470anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
238 242anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 254first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
279 283anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
311 316anti-parallel
Strand 4
A
322 327anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 338first strand
Strand 2
A
345 349anti-parallel
Strand 3
A
354 358anti-parallel
Strand 4
A
363 368anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
395 399anti-parallel
Strand 4
A
404 409anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 421first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
436 440anti-parallel
Strand 4
A
446 450anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il