Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVF entry

There are 2 chains in PDB entry 4YVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 4TYR 432
B
LYS 4TYR 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4YVF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 13Right-handed 310
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
29 40Right-handed alpha
Helix 4
AA4
A
57 70Right-handed alpha
Helix 5
AA5
A
85 95Right-handed alpha
Helix 6
AA6
A
106 117Right-handed alpha
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
144 150Right-handed 310
Helix 9
AA9
A
157 170Right-handed alpha
Helix 10
AB1
A
183 208Right-handed alpha
Helix 11
AB2
A
222 235Right-handed alpha
Helix 12
AB3
A
245 254Right-handed alpha
Helix 13
AB4
A
261 266Right-handed alpha
Helix 14
AB5
A
283 288Right-handed alpha
Helix 15
AB6
A
307 315Right-handed alpha
Helix 16
AB7
A
341 343Right-handed 310
Helix 17
AB8
A
344 349Right-handed alpha
Helix 18
AB9
A
354 375Right-handed alpha
Helix 19
AC1
A
376 379Right-handed 310
Helix 20
AC2
A
387 400Right-handed alpha
Helix 21
AC3
A
410 418Right-handed alpha
Helix 22
AC4
B
11 13Right-handed 310
Helix 23
AC5
B
14 27Right-handed alpha
Helix 24
AC6
B
29 40Right-handed alpha
Helix 25
AC7
B
57 70Right-handed alpha
Helix 26
AC8
B
85 95Right-handed alpha
Helix 27
AC9
B
106 118Right-handed alpha
Helix 28
AD1
B
133 143Right-handed alpha
Helix 29
AD2
B
144 150Right-handed 310
Helix 30
AD3
B
157 170Right-handed alpha
Helix 31
AD4
B
183 208Right-handed alpha
Helix 32
AD5
B
222 235Right-handed alpha
Helix 33
AD6
B
245 255Right-handed alpha
Helix 34
AD7
B
261 266Right-handed alpha
Helix 35
AD8
B
283 288Right-handed alpha
Helix 36
AD9
B
307 315Right-handed alpha
Helix 37
AE1
B
341 343Right-handed 310
Helix 38
AE2
B
344 349Right-handed alpha
Helix 39
AE3
B
354 375Right-handed alpha
Helix 40
AE4
B
376 379Right-handed 310
Helix 41
AE5
B
387 400Right-handed alpha
Helix 42
AE6
B
410 418Right-handed alpha
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There are 6 sheets in PDB entry 4YVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 9first strand
Strand 2
A
99 101parallel
Strand 3
A
73 77parallel
Strand 4
A
49 53parallel
Strand 5
A
127 130parallel
Strand 6
A
153 155parallel
Strand 7
A
176 179parallel
Strand 8
A
382 385parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 120first strand
Strand 2
A
123 124anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 259first strand
Strand 2
A
238 242parallel
Strand 3
A
215 219parallel
Strand 4
A
271 274parallel
Strand 5
A
294 298parallel
Strand 6
A
335 339parallel
Strand 7
A
325 329anti-parallel
Strand 8
A
317 322anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
99 100first strand
Strand 2
B
73 77parallel
Strand 3
B
49 53parallel
Strand 4
B
127 130parallel
Strand 5
B
152 155parallel
Strand 6
B
177 179parallel
Strand 7
B
383 385parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 120first strand
Strand 2
B
123 124anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
258 259first strand
Strand 2
B
238 242parallel
Strand 3
B
215 219parallel
Strand 4
B
271 274parallel
Strand 5
B
294 298parallel
Strand 6
B
335 339parallel
Strand 7
B
325 329anti-parallel
Strand 8
B
317 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il