Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVG entry

There is 1 chain in PDB entry 4YVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 0SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4YVG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 12Right-handed 310
Helix 2
AA2
A
13 18Right-handed alpha
Helix 3
AA3
A
19 28Right-handed alpha
Helix 4
AA4
A
37 42Right-handed 310
Helix 5
AA5
A
63 79Right-handed alpha
Helix 6
AA6
A
95 103Right-handed alpha
Helix 7
AA7
A
119 127Right-handed alpha
Helix 8
AA8
A
141 154Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
200 220Right-handed alpha
Helix 11
AB2
A
220 226Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
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There are 3 sheets in PDB entry 4YVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 36first strand
Strand 2
A
1 6parallel
Strand 3
A
107 111parallel
Strand 4
A
83 87parallel
Strand 5
A
129 132parallel
Strand 6
A
92 93parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 51first strand
Strand 2
A
61 62anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il