Analysis of interatomic Contacts of Structural Units in PDB entry:
4YZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YZD entry

There are 3 chains in PDB entry 4YZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 563GLU 964
B
 VAL 563HIS 963
C
 VAL 563GLU 964
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4YZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
609 618Right-handed alpha
Helix 2
AA2
A
649 655Right-handed alpha
Helix 3
AA3
A
656 661Right-handed 310
Helix 4
AA4
A
664 682Right-handed alpha
Helix 5
AA5
A
690 692Right-handed 310
Helix 6
AA6
A
739 744Right-handed alpha
Helix 7
AA7
A
753 769Right-handed alpha
Helix 8
AA8
A
780 788Right-handed alpha
Helix 9
AA9
A
799 813Right-handed alpha
Helix 10
AB1
A
816 820Right-handed 310
Helix 11
AB2
A
822 828Right-handed alpha
Helix 12
AB3
A
829 833Right-handed 310
Helix 13
AB4
A
834 849Right-handed alpha
Helix 14
AB5
A
856 865Right-handed alpha
Helix 15
AB6
A
879 888Right-handed alpha
Helix 16
AB7
A
896 910Right-handed alpha
Helix 17
AB8
A
911 914Right-handed 310
Helix 18
AB9
A
915 923Right-handed alpha
Helix 19
AC1
A
926 937Right-handed alpha
Helix 20
AC2
A
939 948Right-handed alpha
Helix 21
AC3
A
949 952Right-handed 310
Helix 22
AC4
B
609 618Right-handed alpha
Helix 23
AC5
B
649 656Right-handed alpha
Helix 24
AC6
B
664 682Right-handed alpha
Helix 25
AC7
B
739 744Right-handed 310
Helix 26
AC8
B
753 769Right-handed alpha
Helix 27
AC9
B
777 788Right-handed alpha
Helix 28
AD1
B
799 813Right-handed alpha
Helix 29
AD2
B
816 820Right-handed 310
Helix 30
AD3
B
822 828Right-handed alpha
Helix 31
AD4
B
829 833Right-handed 310
Helix 32
AD5
B
834 850Right-handed alpha
Helix 33
AD6
B
856 866Right-handed alpha
Helix 34
AD7
B
873 877Right-handed 310
Helix 35
AD8
B
879 886Right-handed alpha
Helix 36
AD9
B
896 910Right-handed alpha
Helix 37
AE1
B
911 914Right-handed 310
Helix 38
AE2
B
915 923Right-handed alpha
Helix 39
AE3
B
926 937Right-handed alpha
Helix 40
AE4
B
939 948Right-handed alpha
Helix 41
AE5
B
949 952Right-handed 310
Helix 42
AE6
C
609 618Right-handed alpha
Helix 43
AE7
C
649 655Right-handed alpha
Helix 44
AE8
C
664 682Right-handed alpha
Helix 45
AE9
C
690 692Right-handed 310
Helix 46
AF1
C
739 744Right-handed alpha
Helix 47
AF2
C
753 770Right-handed alpha
Helix 48
AF3
C
780 788Right-handed alpha
Helix 49
AF4
C
799 813Right-handed alpha
Helix 50
AF5
C
816 820Right-handed 310
Helix 51
AF6
C
822 828Right-handed alpha
Helix 52
AF7
C
829 833Right-handed 310
Helix 53
AF8
C
834 850Right-handed alpha
Helix 54
AF9
C
856 865Right-handed alpha
Helix 55
AG1
C
867 871Right-handed 310
Helix 56
AG2
C
873 877Right-handed 310
Helix 57
AG3
C
879 886Right-handed alpha
Helix 58
AG4
C
887 889Right-handed 310
Helix 59
AG5
C
896 910Right-handed alpha
Helix 60
AG6
C
911 914Right-handed 310
Helix 61
AG7
C
915 923Right-handed alpha
Helix 62
AG8
C
926 937Right-handed alpha
Helix 63
AG9
C
939 948Right-handed alpha
Helix 64
AH1
C
949 952Right-handed 310
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There are 10 sheets in PDB entry 4YZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 566first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
585 590anti-parallel
Strand 4
A
595 601anti-parallel
Strand 5
A
638 643anti-parallel
Strand 6
A
628 633anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
714 716anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 566first strand
Strand 2
B
569 571anti-parallel
Strand 3
B
585 590anti-parallel
Strand 4
B
578 579anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 566first strand
Strand 2
B
569 571anti-parallel
Strand 3
B
585 590anti-parallel
Strand 4
B
595 601anti-parallel
Strand 5
B
638 643anti-parallel
Strand 6
B
628 633anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 608first strand
Strand 2
B
714 716anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 648first strand
Strand 2
B
694 697anti-parallel
Strand 3
B
707 709anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
565 566first strand
Strand 2
C
569 579anti-parallel
Strand 3
C
585 590anti-parallel
Strand 4
C
595 601anti-parallel
Strand 5
C
638 643anti-parallel
Strand 6
C
628 633anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
606 608first strand
Strand 2
C
714 716anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
645 648first strand
Strand 2
C
694 697anti-parallel
Strand 3
C
707 709anti-parallel
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