Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4ZGD entry

There are 32 chains in PDB entry 4ZGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LEU 101
A	SER 103	SER 103
A	THR 105	ALA 207
B	MET 1	GLU 206
C	THR 2	LEU 101
C	SER 103	SER 103
C	THR 105	ALA 207
D	MET 1	GLU 206
E	THR 2	LEU 101
E	SER 103	SER 103
E	THR 105	ALA 207
F	MET 1	GLU 206
G	THR 2	LEU 101
G	SER 103	SER 103
G	THR 105	ALA 207
H	MET 1	GLU 206
I	THR 2	LEU 101
I	SER 103	SER 103
I	THR 105	ALA 207
J	MET 1	GLU 206
K	THR 2	LEU 101
K	SER 103	SER 103
K	THR 105	ALA 207
L	MET 1	GLU 206
M	THR 2	LEU 101
M	SER 103	SER 103
M	THR 105	ALA 207
N	MET 1	GLU 206
O	THR 2	LEU 101
O	SER 103	SER 103
O	THR 105	ALA 207
P	MET 1	GLU 206

There are152 helices in PDB entry 4ZGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	21	Right-handed alpha
Helix 2	AA2	A	27	39	Right-handed alpha
Helix 3	AA3	A	41	55	Right-handed alpha
Helix 4	AA4	A	55	65	Right-handed alpha
Helix 5	AA5	A	65	73	Right-handed alpha
Helix 6	AA6	A	106	111	Right-handed alpha
Helix 7	AA7	A	114	119	Right-handed alpha
Helix 8	AA8	A	119	126	Right-handed alpha
Helix 9	AA9	A	129	137	Right-handed alpha
Helix 10	AB1	A	172	178	Right-handed alpha
Helix 11	AB2	A	181	187	Right-handed alpha
Helix 12	AB3	B	27	43	Right-handed alpha
Helix 13	AB4	B	47	57	Right-handed alpha
Helix 14	AB5	B	59	66	Right-handed alpha
Helix 15	AB6	B	67	83	Right-handed alpha
Helix 16	AB7	B	87	96	Right-handed alpha
Helix 17	AB8	B	139	143	Right-handed 310
Helix 18	AB9	B	158	163	Right-handed alpha
Helix 19	AC1	B	180	184	Right-handed alpha
Helix 20	AC2	C	3	21	Right-handed alpha
Helix 21	AC3	C	27	39	Right-handed alpha
Helix 22	AC4	C	41	55	Right-handed alpha
Helix 23	AC5	C	55	65	Right-handed alpha
Helix 24	AC6	C	65	72	Right-handed alpha
Helix 25	AC7	C	106	111	Right-handed alpha
Helix 26	AC8	C	114	119	Right-handed alpha
Helix 27	AC9	C	119	126	Right-handed alpha
Helix 28	AD1	C	129	137	Right-handed alpha
Helix 29	AD2	C	172	178	Right-handed alpha
Helix 30	AD3	C	181	187	Right-handed alpha
Helix 31	AD4	D	27	43	Right-handed alpha
Helix 32	AD5	D	47	57	Right-handed alpha
Helix 33	AD6	D	59	66	Right-handed alpha
Helix 34	AD7	D	67	83	Right-handed alpha
Helix 35	AD8	D	87	96	Right-handed alpha
Helix 36	AD9	D	139	143	Right-handed 310
Helix 37	AE1	D	158	163	Right-handed alpha
Helix 38	AE2	D	180	184	Right-handed alpha
Helix 39	AE3	E	3	21	Right-handed alpha
Helix 40	AE4	E	27	39	Right-handed alpha
Helix 41	AE5	E	41	55	Right-handed alpha
Helix 42	AE6	E	55	65	Right-handed alpha
Helix 43	AE7	E	65	72	Right-handed alpha
Helix 44	AE8	E	106	111	Right-handed alpha
Helix 45	AE9	E	114	119	Right-handed alpha
Helix 46	AF1	E	119	126	Right-handed alpha
Helix 47	AF2	E	129	137	Right-handed alpha
Helix 48	AF3	E	172	178	Right-handed alpha
Helix 49	AF4	E	181	187	Right-handed alpha
Helix 50	AF5	F	27	43	Right-handed alpha
Helix 51	AF6	F	47	57	Right-handed alpha
Helix 52	AF7	F	59	66	Right-handed alpha
Helix 53	AF8	F	67	83	Right-handed alpha
Helix 54	AF9	F	87	96	Right-handed alpha
Helix 55	AG1	F	139	143	Right-handed 310
Helix 56	AG2	F	158	163	Right-handed alpha
Helix 57	AG3	F	180	184	Right-handed alpha
Helix 58	AG4	G	3	21	Right-handed alpha
Helix 59	AG5	G	27	39	Right-handed alpha
Helix 60	AG6	G	41	55	Right-handed alpha
Helix 61	AG7	G	55	65	Right-handed alpha
Helix 62	AG8	G	65	73	Right-handed alpha
Helix 63	AG9	G	106	111	Right-handed alpha
Helix 64	AH1	G	114	119	Right-handed alpha
Helix 65	AH2	G	119	126	Right-handed alpha
Helix 66	AH3	G	129	137	Right-handed alpha
Helix 67	AH4	G	172	178	Right-handed alpha
Helix 68	AH5	G	181	187	Right-handed alpha
Helix 69	AH6	H	27	43	Right-handed alpha
Helix 70	AH7	H	47	57	Right-handed alpha
Helix 71	AH8	H	59	66	Right-handed alpha
Helix 72	AH9	H	67	83	Right-handed alpha
Helix 73	AI1	H	87	96	Right-handed alpha
Helix 74	AI2	H	139	143	Right-handed 310
Helix 75	AI3	H	158	163	Right-handed alpha
Helix 76	AI4	H	180	184	Right-handed alpha
Helix 77	AI5	I	3	21	Right-handed alpha
Helix 78	AI6	I	27	39	Right-handed alpha
Helix 79	AI7	I	41	55	Right-handed alpha
Helix 80	AI8	I	55	65	Right-handed alpha
Helix 81	AI9	I	65	72	Right-handed alpha
Helix 82	AJ1	I	106	111	Right-handed alpha
Helix 83	AJ2	I	114	118	Right-handed 310
Helix 84	AJ3	I	119	126	Right-handed alpha
Helix 85	AJ4	I	129	137	Right-handed alpha
Helix 86	AJ5	I	172	178	Right-handed alpha
Helix 87	AJ6	I	181	187	Right-handed alpha
Helix 88	AJ7	J	27	43	Right-handed alpha
Helix 89	AJ8	J	47	57	Right-handed alpha
Helix 90	AJ9	J	59	66	Right-handed alpha
Helix 91	AK1	J	67	83	Right-handed alpha
Helix 92	AK2	J	87	96	Right-handed alpha
Helix 93	AK3	J	139	143	Right-handed 310
Helix 94	AK4	J	158	163	Right-handed alpha
Helix 95	AK5	J	180	184	Right-handed alpha
Helix 96	AK6	K	3	21	Right-handed alpha
Helix 97	AK7	K	27	39	Right-handed alpha
Helix 98	AK8	K	41	55	Right-handed alpha
Helix 99	AK9	K	55	65	Right-handed alpha
Helix 100	AL1	K	65	73	Right-handed alpha
Helix 101	AL2	K	106	111	Right-handed alpha
Helix 102	AL3	K	114	118	Right-handed 310
Helix 103	AL4	K	119	126	Right-handed alpha
Helix 104	AL5	K	129	137	Right-handed alpha
Helix 105	AL6	K	172	178	Right-handed alpha
Helix 106	AL7	K	181	187	Right-handed alpha
Helix 107	AL8	L	27	43	Right-handed alpha
Helix 108	AL9	L	47	57	Right-handed alpha
Helix 109	AM1	L	59	66	Right-handed alpha
Helix 110	AM2	L	67	83	Right-handed alpha
Helix 111	AM3	L	87	96	Right-handed alpha
Helix 112	AM4	L	139	143	Right-handed 310
Helix 113	AM5	L	158	163	Right-handed alpha
Helix 114	AM6	L	180	184	Right-handed alpha
Helix 115	AM7	M	3	21	Right-handed alpha
Helix 116	AM8	M	27	39	Right-handed alpha
Helix 117	AM9	M	41	55	Right-handed alpha
Helix 118	AN1	M	55	65	Right-handed alpha
Helix 119	AN2	M	65	72	Right-handed alpha
Helix 120	AN3	M	106	111	Right-handed alpha
Helix 121	AN4	M	114	119	Right-handed alpha
Helix 122	AN5	M	119	126	Right-handed alpha
Helix 123	AN6	M	129	137	Right-handed alpha
Helix 124	AN7	M	172	178	Right-handed alpha
Helix 125	AN8	M	181	187	Right-handed alpha
Helix 126	AN9	N	27	43	Right-handed alpha
Helix 127	AO1	N	47	57	Right-handed alpha
Helix 128	AO2	N	59	66	Right-handed alpha
Helix 129	AO3	N	67	84	Right-handed alpha
Helix 130	AO4	N	87	96	Right-handed alpha
Helix 131	AO5	N	139	143	Right-handed 310
Helix 132	AO6	N	158	163	Right-handed alpha
Helix 133	AO7	N	180	184	Right-handed alpha
Helix 134	AO8	O	3	21	Right-handed alpha
Helix 135	AO9	O	27	39	Right-handed alpha
Helix 136	AP1	O	41	55	Right-handed alpha
Helix 137	AP2	O	55	65	Right-handed alpha
Helix 138	AP3	O	65	72	Right-handed alpha
Helix 139	AP4	O	106	111	Right-handed alpha
Helix 140	AP5	O	114	119	Right-handed alpha
Helix 141	AP6	O	119	126	Right-handed alpha
Helix 142	AP7	O	129	137	Right-handed alpha
Helix 143	AP8	O	172	178	Right-handed alpha
Helix 144	AP9	O	181	187	Right-handed alpha
Helix 145	AQ1	P	27	43	Right-handed alpha
Helix 146	AQ2	P	47	57	Right-handed alpha
Helix 147	AQ3	P	59	66	Right-handed alpha
Helix 148	AQ4	P	67	84	Right-handed alpha
Helix 149	AQ5	P	87	96	Right-handed alpha
Helix 150	AQ6	P	139	143	Right-handed 310
Helix 151	AQ7	P	158	163	Right-handed alpha
Helix 152	AQ8	P	181	183	Right-handed 310

There are 20 sheets in PDB entry 4ZGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	156	161	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	146	151	parallel
Strand 3	B	192	198	parallel
Strand 4	B	173	179	anti-parallel
Strand 5	B	146	152	anti-parallel
Strand 6	B	124	127	anti-parallel
Strand 7	B	202	204	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	170	171	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	156	161	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	146	151	parallel
Strand 3	D	192	198	parallel
Strand 4	D	173	179	anti-parallel
Strand 5	D	146	152	anti-parallel
Strand 6	D	124	127	anti-parallel
Strand 7	D	202	204	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	170	171	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	156	161	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	98	first strand
Strand 2	E	146	151	parallel
Strand 3	F	192	198	parallel
Strand 4	F	170	179	anti-parallel
Strand 5	F	146	157	anti-parallel
Strand 6	F	124	127	anti-parallel
Strand 7	F	202	204	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	88	first strand
Strand 2	G	157	161	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	98	first strand
Strand 2	G	146	151	parallel
Strand 3	H	192	198	parallel
Strand 4	H	173	179	anti-parallel
Strand 5	H	146	152	anti-parallel
Strand 6	H	124	127	anti-parallel
Strand 7	H	202	204	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	157	first strand
Strand 2	H	170	171	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	88	first strand
Strand 2	I	156	161	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	98	first strand
Strand 2	I	146	151	parallel
Strand 3	J	192	198	parallel
Strand 4	J	170	179	anti-parallel
Strand 5	J	146	157	anti-parallel
Strand 6	J	124	127	anti-parallel
Strand 7	J	202	204	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	88	first strand
Strand 2	K	157	161	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	93	98	first strand
Strand 2	K	146	151	parallel
Strand 3	L	192	198	parallel
Strand 4	L	170	179	anti-parallel
Strand 5	L	146	157	anti-parallel
Strand 6	L	124	127	anti-parallel
Strand 7	L	202	204	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	88	first strand
Strand 2	M	156	161	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	98	first strand
Strand 2	M	146	151	parallel
Strand 3	N	192	198	parallel
Strand 4	N	173	179	anti-parallel
Strand 5	N	146	152	anti-parallel
Strand 6	N	124	127	anti-parallel
Strand 7	N	202	204	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	157	first strand
Strand 2	N	170	171	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	88	first strand
Strand 2	O	156	161	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	93	98	first strand
Strand 2	O	146	151	parallel
Strand 3	P	192	198	parallel
Strand 4	P	170	179	anti-parallel
Strand 5	P	146	157	anti-parallel
Strand 6	P	124	127	anti-parallel
Strand 7	P	202	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4ZGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4ZGD