Analysis of interatomic Contacts of Structural Units in PDB entry:
5A2E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A2E entry

There is 1 chain in PDB entry 5A2E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 43HIS 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5A2E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
75 87Right-handed alpha
Helix 2
2
A
191 203Right-handed alpha
Helix 3
3
A
250 253Right-handed 310
Helix 4
4
A
295 307Right-handed alpha
Helix 5
5
A
336 340Right-handed 310
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There are 12 sheets in PDB entry 5A2E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 48first strand
Strand 2
A
55 60anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 68first strand
Strand 2
A
55 60parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 97first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 68parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 97first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
45 48anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 129first strand
Strand 2
A
137 140anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
159 164first strand
Strand 2
A
171 178anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 209first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
182 185parallel
Strand 5
A
223 225anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 209first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
171 178anti-parallel
Strand 4
A
159 164anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 228first strand
Strand 2
A
242 243anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
264 269first strand
Strand 2
A
275 282anti-parallel
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There are 6 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 313first strand
Strand 2
A
357 360parallel
Strand 3
A
275 282parallel
Strand 4
A
285 289anti-parallel
Strand 5
A
325 329parallel
Strand 6
A
341 344anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 313first strand
Strand 2
A
357 360parallel
Strand 3
A
275 282parallel
Strand 4
A
264 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il