Analysis of interatomic Contacts of Structural Units in PDB entry:
5A2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A2F entry

There is 1 chain in PDB entry 5A2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 28PRO 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5A2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 87Right-handed 310
Helix 2
2
A
104 108Right-handed 310
Helix 3
3
A
210 214Right-handed 310
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There are 5 sheets in PDB entry 5A2F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
120 131parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
51 59anti-parallel
Strand 5
A
65 72anti-parallel
Strand 6
A
78 80anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
98 100anti-parallel
Strand 3
A
90 92anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
152 162anti-parallel
Strand 3
A
199 207anti-parallel
Strand 4
A
184 192anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
241 243parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
218 226anti-parallel
Strand 4
A
229 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il