Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A4V entry

There are 6 chains in PDB entry 5A4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLN 212
B	GLY 3	GLN 212
C	ALA 2	GLN 212
D	ALA 2	GLN 212
E	ALA 2	GLN 212
F	GLY 3	GLN 212

There are 88 helices in PDB entry 5A4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	25	Right-handed alpha
Helix 2	2	A	35	39	Right-handed 310
Helix 3	3	A	39	43	Right-handed 310
Helix 4	4	A	45	49	Right-handed 310
Helix 5	5	A	67	79	Right-handed alpha
Helix 6	6	A	93	110	Right-handed alpha
Helix 7	7	A	111	123	Right-handed alpha
Helix 8	8	A	123	128	Right-handed alpha
Helix 9	9	A	133	158	Right-handed alpha
Helix 10	10	A	167	172	Right-handed alpha
Helix 11	11	A	173	181	Right-handed alpha
Helix 12	12	A	182	184	Right-handed 310
Helix 13	13	A	185	191	Right-handed alpha
Helix 14	14	A	192	204	Right-handed alpha
Helix 15	15	A	205	211	Right-handed alpha
Helix 16	16	B	12	25	Right-handed alpha
Helix 17	17	B	35	39	Right-handed 310
Helix 18	18	B	39	43	Right-handed 310
Helix 19	19	B	45	49	Right-handed 310
Helix 20	20	B	67	79	Right-handed alpha
Helix 21	21	B	93	110	Right-handed alpha
Helix 22	22	B	111	123	Right-handed alpha
Helix 23	23	B	133	158	Right-handed alpha
Helix 24	24	B	167	172	Right-handed alpha
Helix 25	25	B	173	181	Right-handed alpha
Helix 26	26	B	182	184	Right-handed 310
Helix 27	27	B	185	191	Right-handed alpha
Helix 28	28	B	192	204	Right-handed alpha
Helix 29	29	B	205	211	Right-handed alpha
Helix 30	30	C	12	25	Right-handed alpha
Helix 31	31	C	35	39	Right-handed 310
Helix 32	32	C	39	43	Right-handed 310
Helix 33	33	C	45	49	Right-handed 310
Helix 34	34	C	67	79	Right-handed alpha
Helix 35	35	C	93	110	Right-handed alpha
Helix 36	36	C	111	123	Right-handed alpha
Helix 37	37	C	123	128	Right-handed alpha
Helix 38	38	C	133	158	Right-handed alpha
Helix 39	39	C	167	172	Right-handed alpha
Helix 40	40	C	173	181	Right-handed alpha
Helix 41	41	C	182	184	Right-handed 310
Helix 42	42	C	185	191	Right-handed alpha
Helix 43	43	C	192	204	Right-handed alpha
Helix 44	44	C	205	211	Right-handed alpha
Helix 45	45	D	12	25	Right-handed alpha
Helix 46	46	D	35	39	Right-handed 310
Helix 47	47	D	39	43	Right-handed 310
Helix 48	48	D	45	49	Right-handed 310
Helix 49	49	D	67	79	Right-handed alpha
Helix 50	50	D	93	110	Right-handed alpha
Helix 51	51	D	111	123	Right-handed alpha
Helix 52	52	D	125	129	Right-handed 310
Helix 53	53	D	133	158	Right-handed alpha
Helix 54	54	D	167	172	Right-handed alpha
Helix 55	55	D	173	181	Right-handed alpha
Helix 56	56	D	182	184	Right-handed 310
Helix 57	57	D	185	191	Right-handed alpha
Helix 58	58	D	192	204	Right-handed alpha
Helix 59	59	D	205	211	Right-handed alpha
Helix 60	60	E	12	25	Right-handed alpha
Helix 61	61	E	35	39	Right-handed 310
Helix 62	62	E	39	43	Right-handed 310
Helix 63	63	E	45	49	Right-handed 310
Helix 64	64	E	67	79	Right-handed alpha
Helix 65	65	E	93	110	Right-handed alpha
Helix 66	66	E	111	123	Right-handed alpha
Helix 67	67	E	123	128	Right-handed alpha
Helix 68	68	E	133	158	Right-handed alpha
Helix 69	69	E	167	172	Right-handed alpha
Helix 70	70	E	173	181	Right-handed alpha
Helix 71	71	E	182	184	Right-handed 310
Helix 72	72	E	185	191	Right-handed alpha
Helix 73	73	E	192	204	Right-handed alpha
Helix 74	74	E	205	211	Right-handed alpha
Helix 75	75	F	12	25	Right-handed alpha
Helix 76	76	F	35	39	Right-handed 310
Helix 77	77	F	39	43	Right-handed 310
Helix 78	78	F	45	49	Right-handed 310
Helix 79	79	F	67	79	Right-handed alpha
Helix 80	80	F	93	110	Right-handed alpha
Helix 81	81	F	111	129	Right-handed alpha
Helix 82	82	F	137	158	Right-handed alpha
Helix 83	83	F	167	172	Right-handed alpha
Helix 84	84	F	173	181	Right-handed alpha
Helix 85	85	F	182	184	Right-handed 310
Helix 86	86	F	185	191	Right-handed alpha
Helix 87	87	F	192	204	Right-handed alpha
Helix 88	88	F	205	211	Right-handed alpha

There are 6 sheets in PDB entry 5A4V. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	4	8	parallel
Strand 3	A	57	60	anti-parallel
Strand 4	A	63	66	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	4	8	parallel
Strand 3	B	57	60	anti-parallel
Strand 4	B	63	66	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	4	8	parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	63	66	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	4	8	parallel
Strand 3	D	57	60	anti-parallel
Strand 4	D	63	66	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	E	4	8	parallel
Strand 3	E	57	60	anti-parallel
Strand 4	E	63	66	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	33	first strand
Strand 2	F	4	8	parallel
Strand 3	F	57	60	anti-parallel
Strand 4	F	63	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4V