Analysis of interatomic Contacts of Structural Units in PDB entry:
5A63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A63 entry

There are 4 chains in PDB entry 5A63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34PHE 698
B
 GLY 78ILE 467
C
 GLY 2LEU 244
D
 ASN 2PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 5A63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 40Right-handed alpha
Helix 2
2
A
78 87Right-handed alpha
Helix 3
3
A
104 114Right-handed alpha
Helix 4
4
A
153 157Right-handed 310
Helix 5
5
A
185 200Right-handed alpha
Helix 6
6
A
226 240Right-handed alpha
Helix 7
7
A
298 315Right-handed alpha
Helix 8
8
A
339 350Right-handed alpha
Helix 9
9
A
381 387Right-handed alpha
Helix 10
10
A
387 407Right-handed alpha
Helix 11
11
A
425 434Right-handed alpha
Helix 12
12
A
459 464Right-handed alpha
Helix 13
13
A
474 479Right-handed alpha
Helix 14
14
A
481 503Right-handed alpha
Helix 15
15
A
514 527Right-handed alpha
Helix 16
16
A
534 538Right-handed 310
Helix 17
17
A
541 546Right-handed 310
Helix 18
18
A
561 576Right-handed alpha
Helix 19
19
A
582 588Right-handed alpha
Helix 20
20
A
632 637Right-handed alpha
Helix 21
21
A
665 693Right-handed alpha
Helix 22
22
A
693 698Right-handed alpha
Helix 23
23
B
78 104Right-handed alpha
Helix 24
24
B
105 108Right-handed 310
Helix 25
25
B
167 190Right-handed alpha
Helix 26
26
B
195 215Right-handed alpha
Helix 27
27
B
218 241Right-handed alpha
Helix 28
28
B
242 260Right-handed alpha
Helix 29
29
B
382 399Right-handed alpha
Helix 30
30
B
404 428Right-handed alpha
Helix 31
31
B
435 452Right-handed alpha
Helix 32
32
B
452 464Right-handed alpha
Helix 33
33
C
2 24Right-handed alpha
Helix 34
34
C
28 61Right-handed alpha
Helix 35
35
C
64 103Right-handed alpha
Helix 36
36
C
113 142Right-handed alpha
Helix 37
37
C
155 185Right-handed alpha
Helix 38
38
C
186 206Right-handed alpha
Helix 39
39
C
209 232Right-handed alpha
Helix 40
40
C
235 243Right-handed alpha
Helix 41
41
D
2 6Right-handed 310
Helix 42
42
D
7 22Right-handed alpha
Helix 43
43
D
26 36Right-handed alpha
Helix 44
44
D
37 44Right-handed alpha
Helix 45
45
D
49 85Right-handed alpha
Helix 46
46
D
86 92Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5A63. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
657 664anti-parallel
Strand 3
A
211 218anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
94 98parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
180 183anti-parallel
Strand 3
A
121 124parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
59 62parallel
Strand 3
A
53 54anti-parallel
Strand 4
A
649 651anti-parallel
Strand 5
A
248 250anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
375 379parallel
Strand 3
A
438 442anti-parallel
Strand 4
A
359 366parallel
Strand 5
A
275 281parallel
Strand 6
A
324 330parallel
Strand 7
A
253 259anti-parallel
Strand 8
A
627 630anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
619 623anti-parallel
Strand 3
A
601 605anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 95anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il