Analysis of interatomic Contacts of Structural Units in PDB entry:
5A96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A96 entry

There is 1 chain in PDB entry 5A96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5A96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 23Right-handed alpha
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
137 141Right-handed 310
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
166 170Right-handed 310
Helix 7
7
A
192 198Right-handed alpha
Helix 8
8
A
212 220Right-handed alpha
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There are 3 sheets in PDB entry 5A96. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
154 162anti-parallel
Strand 3
A
101 108anti-parallel
Strand 4
A
28 35anti-parallel
Strand 5
A
41 48anti-parallel
Strand 6
A
206 210anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
172 179anti-parallel
Strand 3
A
110 120anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il