Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9F entry

There is 1 chain in PDB entry 5A9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 67LEU 891
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 5A9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 74Right-handed 310
Helix 2
2
A
77 85Right-handed alpha
Helix 3
3
A
93 102Right-handed alpha
Helix 4
4
A
120 134Right-handed alpha
Helix 5
5
A
146 161Right-handed alpha
Helix 6
6
A
180 184Right-handed 310
Helix 7
7
A
190 204Right-handed alpha
Helix 8
8
A
205 208Right-handed 310
Helix 9
9
A
217 222Right-handed 310
Helix 10
10
A
228 244Right-handed alpha
Helix 11
11
A
270 278Right-handed alpha
Helix 12
12
A
325 336Right-handed alpha
Helix 13
13
A
346 366Right-handed alpha
Helix 14
14
A
383 396Right-handed alpha
Helix 15
15
A
402 409Right-handed alpha
Helix 16
16
A
421 434Right-handed alpha
Helix 17
17
A
443 448Right-handed alpha
Helix 18
18
A
470 479Right-handed alpha
Helix 19
19
A
500 510Right-handed alpha
Helix 20
20
A
528 541Right-handed alpha
Helix 21
21
A
547 557Right-handed alpha
Helix 22
22
A
580 592Right-handed alpha
Helix 23
23
A
612 621Right-handed alpha
Helix 24
24
A
624 639Right-handed alpha
Helix 25
25
A
647 654Right-handed alpha
Helix 26
26
A
665 675Right-handed alpha
Helix 27
27
A
677 688Right-handed alpha
Helix 28
28
A
690 699Right-handed alpha
Helix 29
29
A
711 729Right-handed alpha
Helix 30
30
A
733 742Right-handed alpha
Helix 31
31
A
744 769Right-handed alpha
Helix 32
32
A
771 779Right-handed alpha
Helix 33
33
A
780 788Right-handed alpha
Helix 34
34
A
790 795Right-handed 310
Helix 35
35
A
795 799Right-handed 310
Helix 36
36
A
803 812Right-handed alpha
Helix 37
37
A
817 823Right-handed alpha
Helix 38
38
A
825 835Right-handed alpha
Helix 39
39
A
871 890Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5A9F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
186 189parallel
Strand 3
A
139 143parallel
Strand 4
A
210 215parallel
Strand 5
A
260 265parallel
Strand 6
A
110 114parallel
Strand 7
A
280 284parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
292 298anti-parallel
Strand 4
A
490 496parallel
Strand 5
A
456 459parallel
Strand 6
A
340 343parallel
Strand 7
A
439 442parallel
Strand 8
A
413 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
467 468anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
608 611anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il