Analysis of interatomic Contacts of Structural Units in PDB entry:
5ABT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ABT entry

There is 1 chain in PDB entry 5ABT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5ABT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
30 41Right-handed alpha
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
57 60Right-handed 310
Helix 5
5
A
61 71Right-handed alpha
Helix 6
6
A
84 94Right-handed alpha
Helix 7
7
A
102 108Right-handed alpha
Helix 8
8
A
108 120Right-handed alpha
Helix 9
9
A
153 161Right-handed alpha
Helix 10
10
A
162 164Right-handed 310
Helix 11
11
A
183 194Right-handed alpha
Helix 12
12
A
207 213Right-handed alpha
Helix 13
13
A
225 230Right-handed alpha
Helix 14
14
A
234 246Right-handed alpha
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There are 2 sheets in PDB entry 5ABT. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 9first strand
Strand 2
A
221 224parallel
Strand 3
A
198 202parallel
Strand 4
A
167 171parallel
Strand 5
A
124 127parallel
Strand 6
A
98 101parallel
Strand 7
A
76 79parallel
Strand 8
A
46 50parallel
Strand 9
A
2 9parallel
Strand 10
A
130 132first strand
Strand 11
A
138 142anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 152anti-parallel
Strand 2
A
0 0first strand
Strand 3
A
0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il