Analysis of interatomic Contacts of Structural Units in PDB entry:
5AJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AJO entry

There are 2 chains in PDB entry 5AJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 75LEU 569
B
 ALA 0ALA 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5AJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 81Right-handed 310
Helix 2
2
A
82 88Right-handed alpha
Helix 3
3
A
89 91Right-handed 310
Helix 4
4
A
105 112Right-handed alpha
Helix 5
5
A
123 129Right-handed 310
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
164 166Right-handed 310
Helix 8
8
A
181 186Right-handed alpha
Helix 9
9
A
187 189Right-handed 310
Helix 10
10
A
203 215Right-handed alpha
Helix 11
11
A
234 244Right-handed alpha
Helix 12
12
A
286 296Right-handed alpha
Helix 13
13
A
315 321Right-handed alpha
Helix 14
14
A
335 345Right-handed alpha
Helix 15
15
A
372 377Right-handed alpha
Helix 16
16
A
377 389Right-handed alpha
Helix 17
17
A
392 400Right-handed alpha
Helix 18
18
A
401 404Right-handed 310
Helix 19
19
A
411 421Right-handed alpha
Helix 20
20
A
425 433Right-handed alpha
Helix 21
21
A
477 481Right-handed 310
Helix 22
22
A
517 520Right-handed 310
Helix 23
23
A
544 548Right-handed 310
Helix 24
24
A
558 562Right-handed 310
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There are 11 sheets in PDB entry 5AJO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
168 175parallel
Strand 3
A
138 144parallel
Strand 4
A
219 223parallel
Strand 5
A
311 314anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
348 360anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
348 360parallel
Strand 4
A
301 302parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
348 360parallel
Strand 4
A
227 229anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
348 360parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
280 284anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 472first strand
Strand 2
A
455 458parallel
Strand 3
A
446 452anti-parallel
Strand 4
A
564 568anti-parallel
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There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 472first strand
Strand 2
A
455 458parallel
Strand 3
A
446 452anti-parallel
Strand 4
A
482 484anti-parallel
Strand 5
A
490 492anti-parallel
Strand 6
A
495 498anti-parallel
Strand 7
A
509 512anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 568first strand
Strand 2
A
446 452anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 525first strand
Strand 2
A
530 533anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
551 554anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il