Analysis of interatomic Contacts of Structural Units in PDB entry:
5AOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AOF entry

There is 1 chain in PDB entry 5AOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -17ALA 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5AOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 12Right-handed alpha
Helix 2
2
A
16 21Right-handed alpha
Helix 3
3
A
79 84Right-handed alpha
Helix 4
4
A
119 138Right-handed alpha
Helix 5
5
A
155 164Right-handed alpha
Helix 6
6
A
167 175Right-handed alpha
Helix 7
7
A
177 183Right-handed alpha
Helix 8
8
A
207 211Right-handed 310
Helix 9
9
A
217 224Right-handed alpha
Helix 10
10
A
256 266Right-handed alpha
Helix 11
11
A
274 282Right-handed alpha
Helix 12
12
A
304 306Right-handed 310
Helix 13
13
A
307 315Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5AOF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
342 357parallel
Strand 3
A
42 57anti-parallel
Strand 4
A
35 38anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
325 333anti-parallel
Strand 3
A
232 250anti-parallel
Strand 4
A
283 290parallel
Strand 5
A
299 303parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
325 333anti-parallel
Strand 3
A
232 250anti-parallel
Strand 4
A
187 202anti-parallel
Strand 5
A
147 152anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
232 250parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
325 333anti-parallel
Strand 3
A
232 250anti-parallel
Strand 4
A
75 77parallel
Back to list of sheets
Back to top of page

There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
187 202anti-parallel
Strand 4
A
232 250anti-parallel
Strand 5
A
283 290parallel
Strand 6
A
299 303parallel
Back to list of sheets
Back to top of page

There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
325 333anti-parallel
Strand 3
A
232 250anti-parallel
Strand 4
A
187 202anti-parallel
Strand 5
A
97 102anti-parallel
Strand 6
A
112 115parallel
Back to list of sheets
Back to top of page

There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
97 102parallel
Strand 3
A
187 202anti-parallel
Strand 4
A
147 152anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 412first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
448 455parallel
Strand 4
A
460 467anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 394first strand
Strand 2
A
371 382anti-parallel
Strand 3
A
416 426anti-parallel
Strand 4
A
434 443anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il