Analysis of interatomic Contacts of Structural Units in PDB entry:
5AVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AVN entry

There are 2 chains in PDB entry 5AVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2GLY 388
B
 ASN 2GLY 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5AVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
15 19Right-handed alpha
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
55 59Right-handed alpha
Helix 5
AA5
A
64 83Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
108 130Right-handed alpha
Helix 8
AA8
A
150 173Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
208 210Right-handed 310
Helix 11
AB2
A
217 223Right-handed alpha
Helix 12
AB3
A
227 238Right-handed alpha
Helix 13
AB4
A
264 279Right-handed alpha
Helix 14
AB5
A
295 323Right-handed alpha
Helix 15
AB6
A
323 333Right-handed alpha
Helix 16
AB7
A
334 339Right-handed alpha
Helix 17
AB8
A
346 353Right-handed alpha
Helix 18
AB9
A
354 357Right-handed 310
Helix 19
AC1
A
361 368Right-handed alpha
Helix 20
AC2
A
371 384Right-handed alpha
Helix 21
AC3
B
6 9Right-handed 310
Helix 22
AC4
B
15 19Right-handed alpha
Helix 23
AC5
B
35 46Right-handed alpha
Helix 24
AC6
B
55 59Right-handed alpha
Helix 25
AC7
B
64 83Right-handed alpha
Helix 26
AC8
B
96 100Right-handed 310
Helix 27
AC9
B
108 129Right-handed alpha
Helix 28
AD1
B
145 149Right-handed 310
Helix 29
AD2
B
150 172Right-handed alpha
Helix 30
AD3
B
195 204Right-handed alpha
Helix 31
AD4
B
208 210Right-handed 310
Helix 32
AD5
B
217 223Right-handed alpha
Helix 33
AD6
B
227 238Right-handed alpha
Helix 34
AD7
B
264 279Right-handed alpha
Helix 35
AD8
B
295 323Right-handed alpha
Helix 36
AD9
B
323 333Right-handed alpha
Helix 37
AE1
B
334 340Right-handed alpha
Helix 38
AE2
B
346 353Right-handed alpha
Helix 39
AE3
B
354 357Right-handed 310
Helix 40
AE4
B
361 368Right-handed alpha
Helix 41
AE5
B
371 385Right-handed alpha
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There are 4 sheets in PDB entry 5AVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
177 180parallel
Strand 3
A
133 136parallel
Strand 4
A
85 90parallel
Strand 5
A
50 54parallel
Strand 6
A
11 14parallel
Strand 7
A
284 286parallel
Strand 8
A
245 246parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
190 191anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
177 180parallel
Strand 3
B
133 136parallel
Strand 4
B
85 90parallel
Strand 5
B
50 54parallel
Strand 6
B
11 14parallel
Strand 7
B
284 286parallel
Strand 8
B
244 246parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
190 191anti-parallel
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