Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AYZ entry

There are 12 chains in PDB entry 5AYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 289
B	MET 1	GLU 289
C	MET 1	GLU 289
D	MET 1	GLU 289
E	MET 1	GLU 289
F	MET 1	GLU 289
G	MET 1	GLU 289
H	MET 1	GLU 289
I	MET 1	GLU 289
J	MET 1	GLU 289
K	MET 1	GLU 289
L	MET 1	GLU 289

There are144 helices in PDB entry 5AYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	10	Right-handed 310
Helix 2	AA2	A	11	27	Right-handed alpha
Helix 3	AA3	A	33	38	Right-handed alpha
Helix 4	AA4	A	56	67	Right-handed alpha
Helix 5	AA5	A	94	127	Right-handed alpha
Helix 6	AA6	A	144	155	Right-handed alpha
Helix 7	AA7	A	171	179	Right-handed alpha
Helix 8	AA8	A	180	192	Right-handed alpha
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	225	240	Right-handed alpha
Helix 11	AB2	A	255	260	Right-handed alpha
Helix 12	AB3	A	270	275	Right-handed alpha
Helix 13	AB4	B	4	10	Right-handed 310
Helix 14	AB5	B	11	27	Right-handed alpha
Helix 15	AB6	B	32	38	Right-handed alpha
Helix 16	AB7	B	56	67	Right-handed alpha
Helix 17	AB8	B	94	127	Right-handed alpha
Helix 18	AB9	B	144	155	Right-handed alpha
Helix 19	AC1	B	171	179	Right-handed alpha
Helix 20	AC2	B	180	193	Right-handed alpha
Helix 21	AC3	B	204	214	Right-handed alpha
Helix 22	AC4	B	225	240	Right-handed alpha
Helix 23	AC5	B	255	260	Right-handed alpha
Helix 24	AC6	B	270	275	Right-handed alpha
Helix 25	AC7	C	2	10	Right-handed 310
Helix 26	AC8	C	11	27	Right-handed alpha
Helix 27	AC9	C	33	38	Right-handed alpha
Helix 28	AD1	C	56	67	Right-handed alpha
Helix 29	AD2	C	94	128	Right-handed alpha
Helix 30	AD3	C	144	155	Right-handed alpha
Helix 31	AD4	C	171	179	Right-handed alpha
Helix 32	AD5	C	180	192	Right-handed alpha
Helix 33	AD6	C	204	214	Right-handed alpha
Helix 34	AD7	C	225	240	Right-handed alpha
Helix 35	AD8	C	255	260	Right-handed alpha
Helix 36	AD9	C	270	275	Right-handed alpha
Helix 37	AE1	D	2	10	Right-handed 310
Helix 38	AE2	D	11	27	Right-handed alpha
Helix 39	AE3	D	33	38	Right-handed alpha
Helix 40	AE4	D	56	66	Right-handed alpha
Helix 41	AE5	D	94	128	Right-handed alpha
Helix 42	AE6	D	144	155	Right-handed alpha
Helix 43	AE7	D	171	179	Right-handed alpha
Helix 44	AE8	D	180	192	Right-handed alpha
Helix 45	AE9	D	204	214	Right-handed alpha
Helix 46	AF1	D	225	240	Right-handed alpha
Helix 47	AF2	D	255	260	Right-handed alpha
Helix 48	AF3	D	270	275	Right-handed alpha
Helix 49	AF4	E	4	10	Right-handed 310
Helix 50	AF5	E	11	27	Right-handed alpha
Helix 51	AF6	E	33	38	Right-handed alpha
Helix 52	AF7	E	56	67	Right-handed alpha
Helix 53	AF8	E	94	127	Right-handed alpha
Helix 54	AF9	E	144	155	Right-handed alpha
Helix 55	AG1	E	171	179	Right-handed alpha
Helix 56	AG2	E	180	193	Right-handed alpha
Helix 57	AG3	E	204	214	Right-handed alpha
Helix 58	AG4	E	225	240	Right-handed alpha
Helix 59	AG5	E	255	260	Right-handed alpha
Helix 60	AG6	E	270	275	Right-handed alpha
Helix 61	AG7	F	2	10	Right-handed 310
Helix 62	AG8	F	11	27	Right-handed alpha
Helix 63	AG9	F	32	38	Right-handed alpha
Helix 64	AH1	F	56	67	Right-handed alpha
Helix 65	AH2	F	94	127	Right-handed alpha
Helix 66	AH3	F	144	155	Right-handed alpha
Helix 67	AH4	F	171	179	Right-handed alpha
Helix 68	AH5	F	180	192	Right-handed alpha
Helix 69	AH6	F	204	214	Right-handed alpha
Helix 70	AH7	F	225	240	Right-handed alpha
Helix 71	AH8	F	255	260	Right-handed 310
Helix 72	AH9	F	270	275	Right-handed alpha
Helix 73	AI1	G	2	10	Right-handed 310
Helix 74	AI2	G	11	27	Right-handed alpha
Helix 75	AI3	G	33	38	Right-handed alpha
Helix 76	AI4	G	56	67	Right-handed alpha
Helix 77	AI5	G	94	127	Right-handed alpha
Helix 78	AI6	G	144	155	Right-handed alpha
Helix 79	AI7	G	171	179	Right-handed alpha
Helix 80	AI8	G	180	193	Right-handed alpha
Helix 81	AI9	G	204	214	Right-handed alpha
Helix 82	AJ1	G	225	240	Right-handed alpha
Helix 83	AJ2	G	255	260	Right-handed alpha
Helix 84	AJ3	G	270	275	Right-handed alpha
Helix 85	AJ4	H	4	10	Right-handed 310
Helix 86	AJ5	H	11	27	Right-handed alpha
Helix 87	AJ6	H	32	38	Right-handed alpha
Helix 88	AJ7	H	56	67	Right-handed alpha
Helix 89	AJ8	H	94	128	Right-handed alpha
Helix 90	AJ9	H	144	155	Right-handed alpha
Helix 91	AK1	H	171	179	Right-handed alpha
Helix 92	AK2	H	180	193	Right-handed alpha
Helix 93	AK3	H	204	214	Right-handed alpha
Helix 94	AK4	H	225	240	Right-handed alpha
Helix 95	AK5	H	255	260	Right-handed alpha
Helix 96	AK6	H	270	275	Right-handed alpha
Helix 97	AK7	I	2	10	Right-handed 310
Helix 98	AK8	I	11	27	Right-handed alpha
Helix 99	AK9	I	33	38	Right-handed alpha
Helix 100	AL1	I	56	67	Right-handed alpha
Helix 101	AL2	I	94	128	Right-handed alpha
Helix 102	AL3	I	144	155	Right-handed alpha
Helix 103	AL4	I	171	179	Right-handed alpha
Helix 104	AL5	I	180	193	Right-handed alpha
Helix 105	AL6	I	204	214	Right-handed alpha
Helix 106	AL7	I	225	240	Right-handed alpha
Helix 107	AL8	I	255	260	Right-handed alpha
Helix 108	AL9	I	270	275	Right-handed alpha
Helix 109	AM1	J	2	10	Right-handed 310
Helix 110	AM2	J	11	27	Right-handed alpha
Helix 111	AM3	J	33	38	Right-handed alpha
Helix 112	AM4	J	56	66	Right-handed alpha
Helix 113	AM5	J	94	128	Right-handed alpha
Helix 114	AM6	J	144	155	Right-handed alpha
Helix 115	AM7	J	171	179	Right-handed alpha
Helix 116	AM8	J	180	192	Right-handed alpha
Helix 117	AM9	J	204	214	Right-handed alpha
Helix 118	AN1	J	225	240	Right-handed alpha
Helix 119	AN2	J	255	260	Right-handed alpha
Helix 120	AN3	J	270	275	Right-handed alpha
Helix 121	AN4	K	4	10	Right-handed 310
Helix 122	AN5	K	11	27	Right-handed alpha
Helix 123	AN6	K	33	38	Right-handed alpha
Helix 124	AN7	K	56	67	Right-handed alpha
Helix 125	AN8	K	94	128	Right-handed alpha
Helix 126	AN9	K	144	155	Right-handed alpha
Helix 127	AO1	K	171	178	Right-handed alpha
Helix 128	AO2	K	180	193	Right-handed alpha
Helix 129	AO3	K	204	214	Right-handed alpha
Helix 130	AO4	K	225	240	Right-handed alpha
Helix 131	AO5	K	255	260	Right-handed alpha
Helix 132	AO6	K	270	275	Right-handed alpha
Helix 133	AO7	L	2	10	Right-handed 310
Helix 134	AO8	L	11	27	Right-handed alpha
Helix 135	AO9	L	32	38	Right-handed alpha
Helix 136	AP1	L	56	67	Right-handed alpha
Helix 137	AP2	L	94	128	Right-handed alpha
Helix 138	AP3	L	144	155	Right-handed alpha
Helix 139	AP4	L	171	179	Right-handed alpha
Helix 140	AP5	L	180	193	Right-handed alpha
Helix 141	AP6	L	204	214	Right-handed alpha
Helix 142	AP7	L	225	240	Right-handed alpha
Helix 143	AP8	L	255	260	Right-handed 310
Helix 144	AP9	L	270	275	Right-handed alpha

There are 36 sheets in PDB entry 5AYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	85	93	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	266	268	parallel
Strand 3	A	244	248	parallel
Strand 4	A	218	222	parallel
Strand 5	A	198	202	parallel
Strand 6	A	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	85	93	anti-parallel
Strand 3	B	41	48	anti-parallel
Strand 4	B	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	266	268	parallel
Strand 3	B	244	248	parallel
Strand 4	B	218	222	parallel
Strand 5	B	198	202	parallel
Strand 6	B	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	85	93	anti-parallel
Strand 3	C	41	48	anti-parallel
Strand 4	C	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	266	268	parallel
Strand 3	C	244	248	parallel
Strand 4	C	218	222	parallel
Strand 5	C	198	202	parallel
Strand 6	C	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	85	93	anti-parallel
Strand 3	D	41	48	anti-parallel
Strand 4	D	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	266	268	parallel
Strand 3	D	244	248	parallel
Strand 4	D	218	222	parallel
Strand 5	D	198	202	parallel
Strand 6	D	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	73	first strand
Strand 2	E	85	93	anti-parallel
Strand 3	E	41	48	anti-parallel
Strand 4	E	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	266	268	parallel
Strand 3	E	244	248	parallel
Strand 4	E	218	222	parallel
Strand 5	E	198	202	parallel
Strand 6	E	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	73	first strand
Strand 2	F	85	93	anti-parallel
Strand 3	F	41	48	anti-parallel
Strand 4	F	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	266	268	parallel
Strand 3	F	244	248	parallel
Strand 4	F	218	222	parallel
Strand 5	F	198	202	parallel
Strand 6	F	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	73	first strand
Strand 2	G	85	93	anti-parallel
Strand 3	G	41	48	anti-parallel
Strand 4	G	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	135	first strand
Strand 2	G	266	268	parallel
Strand 3	G	244	248	parallel
Strand 4	G	218	222	parallel
Strand 5	G	198	202	parallel
Strand 6	G	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	73	first strand
Strand 2	H	85	93	anti-parallel
Strand 3	H	41	48	anti-parallel
Strand 4	H	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	53	first strand
Strand 2	H	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	266	268	parallel
Strand 3	H	244	248	parallel
Strand 4	H	218	222	parallel
Strand 5	H	198	202	parallel
Strand 6	H	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	73	first strand
Strand 2	I	85	93	anti-parallel
Strand 3	I	41	48	anti-parallel
Strand 4	I	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	53	first strand
Strand 2	I	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	135	first strand
Strand 2	I	266	268	parallel
Strand 3	I	244	248	parallel
Strand 4	I	218	222	parallel
Strand 5	I	198	202	parallel
Strand 6	I	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	73	first strand
Strand 2	J	85	93	anti-parallel
Strand 3	J	41	48	anti-parallel
Strand 4	J	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	53	first strand
Strand 2	J	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	133	135	first strand
Strand 2	J	266	268	parallel
Strand 3	J	244	248	parallel
Strand 4	J	218	222	parallel
Strand 5	J	198	202	parallel
Strand 6	J	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	70	73	first strand
Strand 2	K	85	93	anti-parallel
Strand 3	K	41	48	anti-parallel
Strand 4	K	281	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	53	first strand
Strand 2	K	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	133	135	first strand
Strand 2	K	266	268	parallel
Strand 3	K	244	248	parallel
Strand 4	K	218	222	parallel
Strand 5	K	198	202	parallel
Strand 6	K	168	170	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	73	first strand
Strand 2	L	85	93	anti-parallel
Strand 3	L	41	48	anti-parallel
Strand 4	L	281	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	53	first strand
Strand 2	L	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	135	first strand
Strand 2	L	266	268	parallel
Strand 3	L	244	248	parallel
Strand 4	L	218	222	parallel
Strand 5	L	198	202	parallel
Strand 6	L	168	170	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AYZ