Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B3F entry

There are 2 chains in PDB entry 5B3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ASN 319
B
 GLN 3ASN 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5B3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
29 42Right-handed alpha
Helix 3
AA3
A
52 55Right-handed 310
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
76 90Right-handed alpha
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
143 153Right-handed alpha
Helix 9
AA9
A
165 181Right-handed alpha
Helix 10
AB1
A
182 188Right-handed 310
Helix 11
AB2
A
202 208Right-handed alpha
Helix 12
AB3
A
233 237Right-handed 310
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
267 270Right-handed 310
Helix 15
AB6
A
271 283Right-handed alpha
Helix 16
AB7
A
287 291Right-handed 310
Helix 17
AB8
A
298 318Right-handed alpha
Helix 18
AB9
B
6 13Right-handed alpha
Helix 19
AC1
B
29 42Right-handed alpha
Helix 20
AC2
B
52 55Right-handed 310
Helix 21
AC3
B
58 66Right-handed alpha
Helix 22
AC4
B
71 75Right-handed 310
Helix 23
AC5
B
76 89Right-handed alpha
Helix 24
AC6
B
127 132Right-handed alpha
Helix 25
AC7
B
143 155Right-handed alpha
Helix 26
AC8
B
166 181Right-handed alpha
Helix 27
AC9
B
182 188Right-handed 310
Helix 28
AD1
B
202 207Right-handed alpha
Helix 29
AD2
B
233 237Right-handed 310
Helix 30
AD3
B
267 270Right-handed 310
Helix 31
AD4
B
271 283Right-handed alpha
Helix 32
AD5
B
287 291Right-handed 310
Helix 33
AD6
B
297 319Right-handed alpha
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There are 6 sheets in PDB entry 5B3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
116 121parallel
Strand 3
A
18 23parallel
Strand 4
A
136 140parallel
Strand 5
A
190 196parallel
Strand 6
A
210 217anti-parallel
Strand 7
A
257 266anti-parallel
Strand 8
A
296 297anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
116 121parallel
Strand 3
A
18 23parallel
Strand 4
A
136 140parallel
Strand 5
A
190 196parallel
Strand 6
A
210 217anti-parallel
Strand 7
A
257 266anti-parallel
Strand 8
A
243 250anti-parallel
Strand 9
B
243 250anti-parallel
Strand 10
B
257 264anti-parallel
Strand 11
B
210 216anti-parallel
Strand 12
B
190 196anti-parallel
Strand 13
B
136 140parallel
Strand 14
B
18 24parallel
Strand 15
B
116 121parallel
Strand 16
B
46 50parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
109 111anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
B
227 231anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
109 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il