Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B3J entry

There are 8 chains in PDB entry 5B3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLY 405
B	VAL 27	PRO 403
C	SER 31	MET 386
E	VAL 2	ARG 222
D	SER 31	MET 386
F	ASP 1	ASN 211
H	VAL 2	ASP 223
L	ASP 1	GLU 212

There are 57 helices in PDB entry 5B3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	48	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	104	112	Right-handed alpha
Helix 5	AA5	A	125	130	Right-handed 310
Helix 6	AA6	A	143	146	Right-handed 310
Helix 7	AA7	A	147	159	Right-handed alpha
Helix 8	AA8	A	170	185	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	245	257	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	277	283	Right-handed alpha
Helix 13	AB4	A	297	319	Right-handed alpha
Helix 14	AB5	A	338	348	Right-handed alpha
Helix 15	AB6	B	35	48	Right-handed alpha
Helix 16	AB7	B	70	82	Right-handed alpha
Helix 17	AB8	B	83	85	Right-handed 310
Helix 18	AB9	B	104	112	Right-handed alpha
Helix 19	AC1	B	125	130	Right-handed 310
Helix 20	AC2	B	143	146	Right-handed 310
Helix 21	AC3	B	147	159	Right-handed alpha
Helix 22	AC4	B	170	185	Right-handed alpha
Helix 23	AC5	B	225	235	Right-handed alpha
Helix 24	AC6	B	245	257	Right-handed alpha
Helix 25	AC7	B	272	276	Right-handed 310
Helix 26	AC8	B	277	283	Right-handed alpha
Helix 27	AC9	B	297	319	Right-handed alpha
Helix 28	AD1	B	338	348	Right-handed alpha
Helix 29	AD2	C	46	55	Right-handed alpha
Helix 30	AD3	C	77	92	Right-handed alpha
Helix 31	AD4	C	106	120	Right-handed alpha
Helix 32	AD5	C	127	132	Right-handed 310
Helix 33	AD6	C	149	165	Right-handed alpha
Helix 34	AD7	C	178	192	Right-handed alpha
Helix 35	AD8	C	233	242	Right-handed alpha
Helix 36	AD9	C	259	264	Right-handed alpha
Helix 37	AE1	C	288	312	Right-handed alpha
Helix 38	AE2	C	330	340	Right-handed alpha
Helix 39	AE3	E	28	32	Right-handed 310
Helix 40	AE4	D	46	55	Right-handed alpha
Helix 41	AE5	D	77	92	Right-handed alpha
Helix 42	AE6	D	106	120	Right-handed alpha
Helix 43	AE7	D	127	132	Right-handed 310
Helix 44	AE8	D	149	165	Right-handed alpha
Helix 45	AE9	D	178	192	Right-handed alpha
Helix 46	AF1	D	233	242	Right-handed alpha
Helix 47	AF2	D	259	264	Right-handed alpha
Helix 48	AF3	D	288	312	Right-handed alpha
Helix 49	AF4	D	330	340	Right-handed alpha
Helix 50	AF5	F	79	83	Right-handed 310
Helix 51	AF6	F	120	127	Right-handed alpha
Helix 52	AF7	F	182	187	Right-handed alpha
Helix 53	AF8	H	28	32	Right-handed 310
Helix 54	AF9	H	165	167	Right-handed 310
Helix 55	AG1	L	79	83	Right-handed 310
Helix 56	AG2	L	120	127	Right-handed alpha
Helix 57	AG3	L	182	187	Right-handed alpha

There are 39 sheets in PDB entry 5B3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	26	33	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	137	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	163	168	parallel
Strand 3	A	239	243	parallel
Strand 4	A	267	270	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	381	388	anti-parallel
Strand 4	A	393	395	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	357	358	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	367	368	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	28	33	parallel
Strand 3	B	87	92	parallel
Strand 4	B	118	120	parallel
Strand 5	B	137	139	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	163	168	parallel
Strand 3	B	239	243	parallel
Strand 4	B	267	270	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	292	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	393	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	367	368	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	73	first strand
Strand 2	C	34	42	parallel
Strand 3	C	94	100	parallel
Strand 4	C	123	125	parallel
Strand 5	C	143	145	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	168	173	parallel
Strand 3	C	230	231	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	278	282	parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	374	380	anti-parallel
Strand 5	C	383	385	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	347	348	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	116	120	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	109	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	144	154	anti-parallel
Strand 3	E	183	193	anti-parallel
Strand 4	E	172	174	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	144	154	anti-parallel
Strand 3	E	183	193	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	163	first strand
Strand 2	E	203	208	anti-parallel
Strand 3	E	213	218	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	73	first strand
Strand 2	D	34	42	parallel
Strand 3	D	94	100	parallel
Strand 4	D	123	125	parallel
Strand 5	D	143	145	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	204	first strand
Strand 2	D	168	173	parallel
Strand 3	D	230	231	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	278	282	parallel
Strand 3	D	362	367	anti-parallel
Strand 4	D	373	379	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	347	348	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	70	76	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	101	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	101	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	96	97	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	128	138	anti-parallel
Strand 3	F	172	181	anti-parallel
Strand 4	F	158	162	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	144	149	anti-parallel
Strand 3	F	190	197	anti-parallel
Strand 4	F	200	209	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	183	193	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	144	154	anti-parallel
Strand 3	H	183	193	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	203	208	anti-parallel
Strand 3	H	213	218	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B3J