Analysis of interatomic Contacts of Structural Units in PDB entry:
5B4X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5B4X entry

There are 4 chains in PDB entry 5B4X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 1954TYR 2668
B
LYS 44ALA 607
C
PRO 1955TYR 2668
D
LYS 44ALA 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5B4X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2133 2139Right-handed 310
Helix 2
AA2
A
2282 2286Right-handed 310
Helix 3
AA3
A
2447 2451Right-handed 310
Helix 4
AA4
A
2483 2488Right-handed 310
Helix 5
AA5
A
2590 2594Right-handed 310
Helix 6
AA6
A
2629 2633Right-handed 310
Helix 7
AA7
B
62 64Right-handed 310
Helix 8
AA8
B
74 78Right-handed 310
Helix 9
AA9
B
113 117Right-handed 310
Helix 10
AB1
B
211 215Right-handed 310
Helix 11
AB2
B
248 252Right-handed 310
Helix 12
AB3
B
350 352Right-handed 310
Helix 13
AB4
B
354 358Right-handed 310
Helix 14
AB5
B
549 553Right-handed 310
Helix 15
AB6
B
565 570Right-handed 310
Helix 16
AB7
C
2133 2139Right-handed 310
Helix 17
AB8
C
2282 2286Right-handed 310
Helix 18
AB9
C
2447 2451Right-handed 310
Helix 19
AC1
C
2483 2488Right-handed 310
Helix 20
AC2
C
2590 2594Right-handed 310
Helix 21
AC3
C
2629 2633Right-handed 310
Helix 22
AC4
D
62 64Right-handed 310
Helix 23
AC5
D
99 103Right-handed 310
Helix 24
AC6
D
113 117Right-handed 310
Helix 25
AC7
D
212 217Right-handed 310
Helix 26
AC8
D
354 358Right-handed 310
Helix 27
AC9
D
549 553Right-handed 310
Helix 28
AD1
D
558 563Right-handed alpha
Helix 29
AD2
D
565 570Right-handed 310
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There are 61 sheets in PDB entry 5B4X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1959 1960first strand
Strand 2
A
2122 2131anti-parallel
Strand 3
A
1997 1999anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1959 1960first strand
Strand 2
A
2122 2131anti-parallel
Strand 3
A
2020 2028anti-parallel
Strand 4
A
2089 2094anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1971 1973first strand
Strand 2
A
2005 2011anti-parallel
Strand 3
A
2102 2113anti-parallel
Strand 4
A
2035 2045anti-parallel
Strand 5
A
2053 2054anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2014 2016first strand
Strand 2
A
2102 2113anti-parallel
Strand 3
A
2035 2045anti-parallel
Strand 4
A
2079 2082anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2141 2144first strand
Strand 2
A
2148 2151anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2155 2156first strand
Strand 2
A
2162 2163anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2170 2172first strand
Strand 2
A
2307 2315anti-parallel
Strand 3
A
2203 2206anti-parallel
Strand 4
A
2190 2192anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2170 2172first strand
Strand 2
A
2307 2315anti-parallel
Strand 3
A
2226 2232anti-parallel
Strand 4
A
2275 2280anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2183 2187first strand
Strand 2
A
2213 2216anti-parallel
Strand 3
A
2291 2295anti-parallel
Strand 4
A
2247 2252anti-parallel
Strand 5
A
2259 2265anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2323 2326first strand
Strand 2
A
2471 2479anti-parallel
Strand 3
A
2354 2357anti-parallel
Strand 4
A
2343 2345anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2323 2326first strand
Strand 2
A
2471 2479anti-parallel
Strand 3
A
2378 2384anti-parallel
Strand 4
A
2440 2445anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2364 2367first strand
Strand 2
A
2452 2461anti-parallel
Strand 3
A
2395 2401anti-parallel
Strand 4
A
2409 2410anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2371 2373first strand
Strand 2
A
2452 2461anti-parallel
Strand 3
A
2395 2401anti-parallel
Strand 4
A
2431 2432anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2490 2493first strand
Strand 2
A
2496 2499anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2503 2504first strand
Strand 2
A
2510 2511anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2519 2521first strand
Strand 2
A
2654 2662anti-parallel
Strand 3
A
2552 2555anti-parallel
Strand 4
A
2538 2541anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2519 2521first strand
Strand 2
A
2654 2662anti-parallel
Strand 3
A
2575 2582anti-parallel
Strand 4
A
2622 2627anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2534 2536first strand
Strand 2
A
2562 2564anti-parallel
Strand 3
A
2638 2642anti-parallel
Strand 4
A
2595 2600anti-parallel
Strand 5
A
2607 2613anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
50 52first strand
Strand 2
B
58 60anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
89 91first strand
Strand 2
B
97 99anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 222first strand
Strand 2
B
229 231anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
238 239first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
259 263first strand
Strand 2
B
266 270anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
275 277first strand
Strand 2
B
284 286anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
359 362first strand
Strand 2
B
343 348anti-parallel
Strand 3
B
333 338anti-parallel
Strand 4
B
312 328anti-parallel
Strand 5
B
299 306anti-parallel
Strand 6
B
293 297anti-parallel
Strand 7
B
545 548anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
371 375first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
390 395anti-parallel
Strand 4
B
401 405anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
412 418first strand
Strand 2
B
423 428anti-parallel
Strand 3
B
434 439anti-parallel
Strand 4
B
446 449anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
460 462first strand
Strand 2
B
467 472anti-parallel
Strand 3
B
477 482anti-parallel
Strand 4
B
489 492anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
501 507first strand
Strand 2
B
510 515anti-parallel
Strand 3
B
520 525anti-parallel
Strand 4
B
533 536anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
573 576first strand
Strand 2
B
587 590anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
596 597first strand
Strand 2
B
604 605anti-parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1971 1973first strand
Strand 2
C
2005 2011anti-parallel
Strand 3
C
2102 2113anti-parallel
Strand 4
C
2035 2045anti-parallel
Strand 5
C
2053 2054anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2014 2016first strand
Strand 2
C
2102 2113anti-parallel
Strand 3
C
2035 2045anti-parallel
Strand 4
C
2079 2082anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1978 1980first strand
Strand 2
C
1996 1999anti-parallel
Strand 3
C
2122 2131anti-parallel
Strand 4
C
2020 2026anti-parallel
Strand 5
C
2089 2091anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2141 2144first strand
Strand 2
C
2148 2151anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2170 2172first strand
Strand 2
C
2307 2315anti-parallel
Strand 3
C
2203 2206anti-parallel
Strand 4
C
2190 2192anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2170 2172first strand
Strand 2
C
2307 2315anti-parallel
Strand 3
C
2226 2233anti-parallel
Strand 4
C
2275 2280anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2185 2187first strand
Strand 2
C
2213 2215anti-parallel
Strand 3
C
2291 2295anti-parallel
Strand 4
C
2247 2252anti-parallel
Strand 5
C
2259 2265anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2324 2326first strand
Strand 2
C
2471 2479anti-parallel
Strand 3
C
2354 2357anti-parallel
Strand 4
C
2342 2345anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2324 2326first strand
Strand 2
C
2471 2479anti-parallel
Strand 3
C
2378 2384anti-parallel
Strand 4
C
2440 2445anti-parallel
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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2336 2338first strand
Strand 2
C
2365 2368anti-parallel
Strand 3
C
2456 2460anti-parallel
Strand 4
C
2395 2401anti-parallel
Strand 5
C
2409 2410anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2336 2338first strand
Strand 2
C
2365 2368anti-parallel
Strand 3
C
2456 2460anti-parallel
Strand 4
C
2395 2401anti-parallel
Strand 5
C
2431 2432anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2490 2493first strand
Strand 2
C
2496 2499anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2503 2504first strand
Strand 2
C
2510 2511anti-parallel
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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2519 2521first strand
Strand 2
C
2654 2662anti-parallel
Strand 3
C
2552 2555anti-parallel
Strand 4
C
2538 2541anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2519 2521first strand
Strand 2
C
2654 2662anti-parallel
Strand 3
C
2575 2582anti-parallel
Strand 4
C
2622 2627anti-parallel
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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2532 2536first strand
Strand 2
C
2562 2565anti-parallel
Strand 3
C
2638 2642anti-parallel
Strand 4
C
2595 2600anti-parallel
Strand 5
C
2607 2613anti-parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
50 52first strand
Strand 2
D
58 60anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 91first strand
Strand 2
D
97 98anti-parallel
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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
220 222first strand
Strand 2
D
229 231anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
238 239first strand
Strand 2
D
244 245anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
259 262first strand
Strand 2
D
267 270anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
275 276first strand
Strand 2
D
285 286anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
311 316first strand
Strand 2
D
302 306anti-parallel
Strand 3
D
293 297anti-parallel
Strand 4
D
545 548anti-parallel
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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
322 328first strand
Strand 2
D
333 338anti-parallel
Strand 3
D
343 348anti-parallel
Strand 4
D
359 362anti-parallel
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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
371 375first strand
Strand 2
D
380 385anti-parallel
Strand 3
D
390 395anti-parallel
Strand 4
D
401 405anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
412 418first strand
Strand 2
D
423 428anti-parallel
Strand 3
D
434 439anti-parallel
Strand 4
D
446 449anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
456 462first strand
Strand 2
D
467 472anti-parallel
Strand 3
D
477 482anti-parallel
Strand 4
D
489 492anti-parallel
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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
501 507first strand
Strand 2
D
510 515anti-parallel
Strand 3
D
520 525anti-parallel
Strand 4
D
533 536anti-parallel
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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
573 576first strand
Strand 2
D
587 590anti-parallel
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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
596 597first strand
Strand 2
D
604 605anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il