Analysis of interatomic Contacts of Structural Units in PDB entry:
5B83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5B83 entry

There are 6 chains in PDB entry 5B83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 302
B	GLN 443	LYS 501
C	ASP 445	ALA 505
D	MET 1	ARG 300
E	LYS 453	GLU 502
F	MET 447	ALA 505

There are 24 helices in PDB entry 5B83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	55	59	Right-handed 310
Helix 4	AA4	A	98	111	Right-handed alpha
Helix 5	AA5	A	113	115	Right-handed 310
Helix 6	AA6	A	174	187	Right-handed alpha
Helix 7	AA7	A	189	191	Right-handed 310
Helix 8	AA8	A	250	263	Right-handed alpha
Helix 9	AA9	A	265	267	Right-handed 310
Helix 10	AB1	A	284	288	Right-handed 310
Helix 11	AB2	B	446	498	Right-handed alpha
Helix 12	AB3	C	447	458	Right-handed alpha
Helix 13	AB4	C	459	503	Right-handed alpha
Helix 14	AB5	D	22	35	Right-handed alpha
Helix 15	AB6	D	37	39	Right-handed 310
Helix 16	AB7	D	98	111	Right-handed alpha
Helix 17	AB8	D	113	115	Right-handed 310
Helix 18	AB9	D	174	187	Right-handed alpha
Helix 19	AC1	D	189	191	Right-handed 310
Helix 20	AC2	D	208	212	Right-handed 310
Helix 21	AC3	D	250	263	Right-handed alpha
Helix 22	AC4	D	265	269	Right-handed 310
Helix 23	AC5	E	457	500	Right-handed alpha
Helix 24	AC6	F	448	500	Right-handed alpha

There are 8 sheets in PDB entry 5B83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	66	71	parallel
Strand 4	A	41	45	anti-parallel
Strand 5	A	48	50	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	142	147	parallel
Strand 4	A	117	121	anti-parallel
Strand 5	A	124	125	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	153	158	anti-parallel
Strand 3	A	218	223	parallel
Strand 4	A	193	197	anti-parallel
Strand 5	A	200	201	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	230	234	anti-parallel
Strand 3	A	294	299	parallel
Strand 4	A	269	273	anti-parallel
Strand 5	A	276	277	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	44	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	142	147	parallel
Strand 4	D	117	121	anti-parallel
Strand 5	D	124	125	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	169	first strand
Strand 2	D	153	159	anti-parallel
Strand 3	D	218	223	parallel
Strand 4	D	193	197	anti-parallel
Strand 5	D	200	201	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	245	first strand
Strand 2	D	229	235	anti-parallel
Strand 3	D	294	298	parallel
Strand 4	D	270	273	anti-parallel
Strand 5	D	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5B83

Analysis of interatomic Contacts of Structural Units in PDB entry:
5B83