Analysis of interatomic Contacts of Structural Units in PDB entry:
5BMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BMQ entry

There is 1 chain in PDB entry 5BMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 99THR 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5BMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 125Right-handed alpha
Helix 2
AA2
A
137 151Right-handed alpha
Helix 3
AA3
A
161 173Right-handed alpha
Helix 4
AA4
A
175 179Right-handed 310
Helix 5
AA5
A
265 269Right-handed 310
Helix 6
AA6
A
277 288Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5BMQ.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
187 191parallel
Strand 4
A
196 201anti-parallel
Strand 5
A
204 213anti-parallel
Strand 6
A
274 276anti-parallel
Strand 7
A
254 258parallel
Strand 8
A
242 251anti-parallel
Strand 9
A
230 237anti-parallel
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