Analysis of interatomic Contacts of Structural Units in PDB entry:
5BWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5BWA entry

There are 2 chains in PDB entry 5BWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19SER 410
B
 ASN 93GLU 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5BWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
69 71Right-handed 310
Helix 4
AA4
A
73 84Right-handed alpha
Helix 5
AA5
A
91 101Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
135 146Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
204 206Right-handed 310
Helix 10
AB1
A
207 226Right-handed alpha
Helix 11
AB2
A
248 263Right-handed alpha
Helix 12
AB3
A
276 281Right-handed alpha
Helix 13
AB4
A
327 332Right-handed alpha
Helix 14
AB5
B
153 165Right-handed alpha
Helix 15
AB6
B
182 193Right-handed alpha
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There are 4 sheets in PDB entry 5BWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
353 356anti-parallel
Strand 3
A
313 318parallel
Strand 4
A
284 296anti-parallel
Strand 5
A
380 384anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
353 356anti-parallel
Strand 3
A
313 318parallel
Strand 4
A
284 296anti-parallel
Strand 5
A
40 44anti-parallel
Strand 6
A
404 408parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
86 89parallel
Strand 3
A
108 110parallel
Strand 4
A
130 133parallel
Strand 5
A
150 154parallel
Strand 6
A
191 195parallel
Strand 7
A
231 233parallel
Strand 8
A
271 273parallel
Strand 9
A
63 67parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
115 120anti-parallel
Strand 4
B
128 135anti-parallel
Strand 5
B
138 142anti-parallel
Strand 6
B
171 177parallel
Strand 7
B
211 217anti-parallel
Strand 8
B
195 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il