Analysis of interatomic Contacts of Structural Units in PDB entry:
5C3I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C3I entry

There are 24 chains in PDB entry 5C3I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2TRP 153
B
LEU 48ARG 134
C
ASP 24GLY 101
D
ASP 68UNK 140
E
ALA 2GLU 154
F
ALA 47ARG 134
G
ASP 24PHE 100
H
ASP 68GLU 123
I
ALA 2GLU 154
J
ILE 51ARG 134
K
ILE 26GLY 101
L
ASP 68GLU 123
M
ALA 2TRP 153
N
GLU 59ARG 134
O
ASP 24GLY 101
P
GLY 69ALA 116
Q
ALA 2ASP 155
R
LEU 60GLU 133
S
ASP 24GLY 101
T
GLY 69ALA 124
U
LYS 3ASN 152
V
GLU 59ARG 134
W
ASP 24PHE 100
X
ASP 68GLU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5C3I. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
50 52Right-handed 310
Helix 2
AA2
A
80 84Right-handed 310
Helix 3
AA3
A
85 90Right-handed alpha
Helix 4
AA4
A
119 125Right-handed alpha
Helix 5
AA5
A
131 133Right-handed 310
Helix 6
AA6
B
49 58Right-handed alpha
Helix 7
AA7
B
63 79Right-handed alpha
Helix 8
AA8
B
85 114Right-handed alpha
Helix 9
AA9
B
120 131Right-handed alpha
Helix 10
AB1
C
24 29Right-handed 310
Helix 11
AB2
C
30 42Right-handed alpha
Helix 12
AB3
C
49 76Right-handed alpha
Helix 13
AB4
C
82 92Right-handed alpha
Helix 14
AB5
D
106 121Right-handed alpha
Helix 15
AB6
E
50 52Right-handed 310
Helix 16
AB7
E
85 90Right-handed alpha
Helix 17
AB8
E
119 125Right-handed alpha
Helix 18
AB9
E
131 133Right-handed 310
Helix 19
AC1
F
63 77Right-handed alpha
Helix 20
AC2
F
85 114Right-handed alpha
Helix 21
AC3
F
120 131Right-handed alpha
Helix 22
AC4
G
25 29Right-handed 310
Helix 23
AC5
G
30 42Right-handed alpha
Helix 24
AC6
G
49 76Right-handed alpha
Helix 25
AC7
G
82 92Right-handed alpha
Helix 26
AC8
H
76 81Right-handed alpha
Helix 27
AC9
H
106 122Right-handed alpha
Helix 28
AD1
I
50 52Right-handed 310
Helix 29
AD2
I
80 84Right-handed 310
Helix 30
AD3
I
85 90Right-handed alpha
Helix 31
AD4
I
119 125Right-handed alpha
Helix 32
AD5
I
131 133Right-handed 310
Helix 33
AD6
J
63 79Right-handed alpha
Helix 34
AD7
J
85 114Right-handed alpha
Helix 35
AD8
J
120 130Right-handed alpha
Helix 36
AD9
K
30 42Right-handed alpha
Helix 37
AE1
K
49 76Right-handed alpha
Helix 38
AE2
K
82 94Right-handed alpha
Helix 39
AE3
L
77 82Right-handed 310
Helix 40
AE4
L
106 123Right-handed alpha
Helix 41
AE5
M
50 52Right-handed 310
Helix 42
AE6
M
80 84Right-handed 310
Helix 43
AE7
M
85 90Right-handed alpha
Helix 44
AE8
M
119 125Right-handed alpha
Helix 45
AE9
M
131 133Right-handed 310
Helix 46
AF1
N
63 77Right-handed alpha
Helix 47
AF2
N
85 114Right-handed alpha
Helix 48
AF3
N
120 131Right-handed alpha
Helix 49
AF4
O
25 29Right-handed 310
Helix 50
AF5
O
30 42Right-handed alpha
Helix 51
AF6
O
49 76Right-handed alpha
Helix 52
AF7
O
82 92Right-handed alpha
Helix 53
AF8
P
76 81Right-handed alpha
Helix 54
AF9
P
106 116Right-handed alpha
Helix 55
AG1
Q
50 52Right-handed 310
Helix 56
AG2
Q
80 84Right-handed 310
Helix 57
AG3
Q
85 90Right-handed alpha
Helix 58
AG4
Q
119 125Right-handed alpha
Helix 59
AG5
Q
131 133Right-handed 310
Helix 60
AG6
R
63 79Right-handed alpha
Helix 61
AG7
R
85 114Right-handed alpha
Helix 62
AG8
R
120 130Right-handed alpha
Helix 63
AG9
S
24 29Right-handed 310
Helix 64
AH1
S
30 42Right-handed alpha
Helix 65
AH2
S
49 76Right-handed alpha
Helix 66
AH3
S
82 94Right-handed alpha
Helix 67
AH4
T
77 82Right-handed 310
Helix 68
AH5
T
106 124Right-handed alpha
Helix 69
AH6
U
50 52Right-handed 310
Helix 70
AH7
U
80 84Right-handed 310
Helix 71
AH8
U
85 90Right-handed alpha
Helix 72
AH9
U
119 125Right-handed alpha
Helix 73
AI1
U
131 133Right-handed 310
Helix 74
AI2
V
63 79Right-handed alpha
Helix 75
AI3
V
85 114Right-handed alpha
Helix 76
AI4
V
120 131Right-handed alpha
Helix 77
AI5
W
24 29Right-handed 310
Helix 78
AI6
W
30 41Right-handed alpha
Helix 79
AI7
W
49 76Right-handed alpha
Helix 80
AI8
W
82 92Right-handed alpha
Helix 81
AI9
X
106 123Right-handed alpha
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There are 30 sheets in PDB entry 5C3I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 11first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
68 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 17first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
104 117anti-parallel
Strand 4
A
145 148anti-parallel
Strand 5
C
95 98anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 17first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
104 117anti-parallel
Strand 4
A
92 101anti-parallel
Strand 5
A
38 45anti-parallel
Strand 6
A
54 62anti-parallel
Strand 7
D
138 139parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
83 84first strand
Strand 2
C
80 81parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 119first strand
Strand 2
C
45 46parallel
Strand 3
D
70 71anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4 11first strand
Strand 2
E
22 30anti-parallel
Strand 3
E
68 76anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
16 17first strand
Strand 2
E
135 148anti-parallel
Strand 3
E
105 117anti-parallel
Strand 4
E
92 101anti-parallel
Strand 5
E
38 45anti-parallel
Strand 6
E
54 62anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
16 17first strand
Strand 2
E
135 148anti-parallel
Strand 3
G
95 98anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
56 58first strand
Strand 2
F
48 53parallel
Strand 3
M
68 76anti-parallel
Strand 4
M
22 30anti-parallel
Strand 5
M
4 11anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
83 84first strand
Strand 2
G
80 81parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
45 47first strand
Strand 2
H
69 71anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 11first strand
Strand 2
I
22 30anti-parallel
Strand 3
I
68 76anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
16 17first strand
Strand 2
I
135 148anti-parallel
Strand 3
I
104 117anti-parallel
Strand 4
I
91 101anti-parallel
Strand 5
I
38 45anti-parallel
Strand 6
I
54 62anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
16 17first strand
Strand 2
I
135 148anti-parallel
Strand 3
K
95 97anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
52 53first strand
Strand 2
M
54 62parallel
Strand 3
M
38 45anti-parallel
Strand 4
M
91 101anti-parallel
Strand 5
M
104 117anti-parallel
Strand 6
M
135 139anti-parallel
Strand 7
M
16 17anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
52 53first strand
Strand 2
M
54 62parallel
Strand 3
M
38 45anti-parallel
Strand 4
M
91 101anti-parallel
Strand 5
M
104 117anti-parallel
Strand 6
M
145 148anti-parallel
Strand 7
O
96 98anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
83 84first strand
Strand 2
K
80 81parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
118 119first strand
Strand 2
K
45 46parallel
Strand 3
L
70 71anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
83 84first strand
Strand 2
O
80 81parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
118 119first strand
Strand 2
O
45 46parallel
Strand 3
P
70 71anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
4 11first strand
Strand 2
Q
22 30anti-parallel
Strand 3
Q
68 76anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
16 17first strand
Strand 2
Q
135 139anti-parallel
Strand 3
Q
104 117anti-parallel
Strand 4
Q
91 101anti-parallel
Strand 5
Q
38 45anti-parallel
Strand 6
Q
54 62anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
16 17first strand
Strand 2
Q
135 139anti-parallel
Strand 3
Q
104 117anti-parallel
Strand 4
Q
145 148anti-parallel
Strand 5
S
95 97anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
83 84first strand
Strand 2
S
80 81parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
45 46first strand
Strand 2
T
70 71anti-parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
4 11first strand
Strand 2
U
22 30anti-parallel
Strand 3
U
68 76anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
16 17first strand
Strand 2
U
135 148anti-parallel
Strand 3
U
104 117anti-parallel
Strand 4
U
92 101anti-parallel
Strand 5
U
38 45anti-parallel
Strand 6
U
54 62anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
16 17first strand
Strand 2
U
135 148anti-parallel
Strand 3
W
95 98anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
83 84first strand
Strand 2
W
80 81parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
118 119first strand
Strand 2
W
45 46parallel
Strand 3
X
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il