Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5B entry

There are 4 chains in PDB entry 5C5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 4LYS 375
B
ASP 5SER 374
C
MET 4LYS 375
D
ASP 5ARG 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5C5B. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
16 69Right-handed alpha
Helix 3
AA3
A
81 111Right-handed alpha
Helix 4
AA4
A
111 121Right-handed alpha
Helix 5
AA5
A
121 149Right-handed alpha
Helix 6
AA6
A
156 217Right-handed alpha
Helix 7
AA7
A
217 258Right-handed alpha
Helix 8
AA8
A
359 374Right-handed alpha
Helix 9
AA9
B
8 12Right-handed 310
Helix 10
AB1
B
16 71Right-handed alpha
Helix 11
AB2
B
79 111Right-handed alpha
Helix 12
AB3
B
111 149Right-handed alpha
Helix 13
AB4
B
156 218Right-handed alpha
Helix 14
AB5
B
219 255Right-handed alpha
Helix 15
AB6
B
258 262Right-handed 310
Helix 16
AB7
B
265 270Right-handed 310
Helix 17
AB8
B
359 374Right-handed alpha
Helix 18
AB9
C
8 12Right-handed 310
Helix 19
AC1
C
16 71Right-handed alpha
Helix 20
AC2
C
81 111Right-handed alpha
Helix 21
AC3
C
111 121Right-handed alpha
Helix 22
AC4
C
121 149Right-handed alpha
Helix 23
AC5
C
156 216Right-handed alpha
Helix 24
AC6
C
217 258Right-handed alpha
Helix 25
AC7
C
359 374Right-handed alpha
Helix 26
AC8
D
8 12Right-handed 310
Helix 27
AC9
D
16 71Right-handed alpha
Helix 28
AD1
D
79 111Right-handed alpha
Helix 29
AD2
D
111 149Right-handed alpha
Helix 30
AD3
D
156 218Right-handed alpha
Helix 31
AD4
D
219 255Right-handed alpha
Helix 32
AD5
D
258 262Right-handed 310
Helix 33
AD6
D
265 270Right-handed 310
Helix 34
AD7
D
359 375Right-handed alpha
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There are 4 sheets in PDB entry 5C5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
320 324first strand
Strand 2
A
308 312anti-parallel
Strand 3
A
296 305anti-parallel
Strand 4
A
281 288anti-parallel
Strand 5
A
354 356anti-parallel
Strand 6
A
341 346anti-parallel
Strand 7
A
328 332anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
320 324first strand
Strand 2
B
308 312anti-parallel
Strand 3
B
296 305anti-parallel
Strand 4
B
281 288anti-parallel
Strand 5
B
351 356anti-parallel
Strand 6
B
341 345anti-parallel
Strand 7
B
329 333anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
320 324first strand
Strand 2
C
308 312anti-parallel
Strand 3
C
297 305anti-parallel
Strand 4
C
281 287anti-parallel
Strand 5
C
355 356anti-parallel
Strand 6
C
341 346anti-parallel
Strand 7
C
328 332anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
320 324first strand
Strand 2
D
308 312anti-parallel
Strand 3
D
295 305anti-parallel
Strand 4
D
281 289anti-parallel
Strand 5
D
351 356anti-parallel
Strand 6
D
338 345anti-parallel
Strand 7
D
329 335anti-parallel
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