Analysis of interatomic Contacts of Structural Units in PDB entry:
5C5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C5J entry

There are 6 chains in PDB entry 5C5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
GLY 0PRO 341
A
GLY 0PRO 341
G
T 837 C 854
H
G 860 C 873
B
T 837 C 854
C
C 857 C 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5C5J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
F
11 21Right-handed alpha
Helix 2
AA2
F
22 25Right-handed 310
Helix 3
AA3
F
45 51Right-handed alpha
Helix 4
AA4
F
58 66Right-handed alpha
Helix 5
AA5
F
75 92Right-handed alpha
Helix 6
AA6
F
118 135Right-handed alpha
Helix 7
AA7
F
145 154Right-handed alpha
Helix 8
AA8
F
168 175Right-handed alpha
Helix 9
AA9
F
177 181Right-handed 310
Helix 10
AB1
F
185 194Right-handed alpha
Helix 11
AB2
F
199 205Right-handed alpha
Helix 12
AB3
F
207 216Right-handed alpha
Helix 13
AB4
F
216 226Right-handed alpha
Helix 14
AB5
F
255 278Right-handed alpha
Helix 15
AB6
F
308 324Right-handed alpha
Helix 16
AB7
A
11 21Right-handed alpha
Helix 17
AB8
A
22 25Right-handed 310
Helix 18
AB9
A
45 50Right-handed alpha
Helix 19
AC1
A
58 66Right-handed alpha
Helix 20
AC2
A
75 94Right-handed alpha
Helix 21
AC3
A
118 135Right-handed alpha
Helix 22
AC4
A
145 156Right-handed alpha
Helix 23
AC5
A
165 167Right-handed 310
Helix 24
AC6
A
168 175Right-handed alpha
Helix 25
AC7
A
177 181Right-handed 310
Helix 26
AC8
A
185 195Right-handed alpha
Helix 27
AC9
A
199 205Right-handed alpha
Helix 28
AD1
A
207 216Right-handed alpha
Helix 29
AD2
A
216 226Right-handed alpha
Helix 30
AD3
A
255 278Right-handed alpha
Helix 31
AD4
A
308 324Right-handed alpha
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There are 6 sheets in PDB entry 5C5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
97 101first strand
Strand 2
F
104 108anti-parallel
Strand 3
F
4 9anti-parallel
Strand 4
F
138 143anti-parallel
Strand 5
F
161 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
41 44first strand
Strand 2
F
29 32anti-parallel
Strand 3
F
70 72parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
242 253first strand
Strand 2
F
329 337anti-parallel
Strand 3
F
285 292anti-parallel
Strand 4
F
297 303anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 101first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
138 143anti-parallel
Strand 5
A
161 163parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 44first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
70 72parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
242 253first strand
Strand 2
A
329 337anti-parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
297 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il