Analysis of interatomic Contacts of Structural Units in PDB entry:
5CUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CUF entry

There are 5 chains in PDB entry 5CUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 66TYR 478
B
 GLY 66TYR 478
C
 GLY 66TYR 478
D
 GLY 66TYR 478
E
 GLY 66TYR 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 5CUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 73Right-handed alpha
Helix 2
AA2
A
77 84Right-handed alpha
Helix 3
AA3
A
86 103Right-handed alpha
Helix 4
AA4
A
108 122Right-handed alpha
Helix 5
AA5
A
125 139Right-handed alpha
Helix 6
AA6
A
142 152Right-handed 310
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
A
170 173Right-handed 310
Helix 10
AB1
A
174 182Right-handed alpha
Helix 11
AB2
A
190 215Right-handed alpha
Helix 12
AB3
A
231 236Right-handed alpha
Helix 13
AB4
A
257 271Right-handed alpha
Helix 14
AB5
A
280 282Right-handed 310
Helix 15
AB6
A
283 293Right-handed alpha
Helix 16
AB7
A
309 316Right-handed 310
Helix 17
AB8
A
340 343Right-handed 310
Helix 18
AB9
A
346 356Right-handed alpha
Helix 19
AC1
A
356 373Right-handed alpha
Helix 20
AC2
A
386 401Right-handed alpha
Helix 21
AC3
A
411 417Right-handed alpha
Helix 22
AC4
A
418 431Right-handed alpha
Helix 23
AC5
A
436 442Right-handed alpha
Helix 24
AC6
A
449 477Right-handed alpha
Helix 25
AC7
B
67 73Right-handed alpha
Helix 26
AC8
B
77 84Right-handed alpha
Helix 27
AC9
B
86 103Right-handed alpha
Helix 28
AD1
B
108 122Right-handed alpha
Helix 29
AD2
B
125 139Right-handed alpha
Helix 30
AD3
B
142 152Right-handed 310
Helix 31
AD4
B
153 158Right-handed alpha
Helix 32
AD5
B
158 169Right-handed alpha
Helix 33
AD6
B
170 173Right-handed 310
Helix 34
AD7
B
174 181Right-handed alpha
Helix 35
AD8
B
190 215Right-handed alpha
Helix 36
AD9
B
231 236Right-handed alpha
Helix 37
AE1
B
257 269Right-handed alpha
Helix 38
AE2
B
270 271Right-handed 310
Helix 39
AE3
B
280 282Right-handed 310
Helix 40
AE4
B
283 293Right-handed alpha
Helix 41
AE5
B
309 316Right-handed 310
Helix 42
AE6
B
340 342Right-handed 310
Helix 43
AE7
B
346 356Right-handed alpha
Helix 44
AE8
B
356 373Right-handed alpha
Helix 45
AE9
B
386 401Right-handed alpha
Helix 46
AF1
B
411 417Right-handed alpha
Helix 47
AF2
B
418 431Right-handed alpha
Helix 48
AF3
B
436 442Right-handed alpha
Helix 49
AF4
B
448 477Right-handed alpha
Helix 50
AF5
C
67 73Right-handed alpha
Helix 51
AF6
C
77 84Right-handed alpha
Helix 52
AF7
C
86 103Right-handed alpha
Helix 53
AF8
C
108 122Right-handed alpha
Helix 54
AF9
C
125 139Right-handed alpha
Helix 55
AG1
C
142 152Right-handed 310
Helix 56
AG2
C
153 158Right-handed alpha
Helix 57
AG3
C
159 169Right-handed alpha
Helix 58
AG4
C
170 173Right-handed 310
Helix 59
AG5
C
174 182Right-handed alpha
Helix 60
AG6
C
190 215Right-handed alpha
Helix 61
AG7
C
231 236Right-handed alpha
Helix 62
AG8
C
256 269Right-handed alpha
Helix 63
AG9
C
270 271Right-handed 310
Helix 64
AH1
C
280 282Right-handed 310
Helix 65
AH2
C
283 293Right-handed alpha
Helix 66
AH3
C
309 316Right-handed 310
Helix 67
AH4
C
340 342Right-handed 310
Helix 68
AH5
C
346 356Right-handed alpha
Helix 69
AH6
C
356 373Right-handed alpha
Helix 70
AH7
C
386 401Right-handed alpha
Helix 71
AH8
C
411 417Right-handed alpha
Helix 72
AH9
C
418 431Right-handed alpha
Helix 73
AI1
C
436 442Right-handed alpha
Helix 74
AI2
C
448 477Right-handed alpha
Helix 75
AI3
D
67 73Right-handed alpha
Helix 76
AI4
D
77 84Right-handed alpha
Helix 77
AI5
D
86 103Right-handed alpha
Helix 78
AI6
D
108 122Right-handed alpha
Helix 79
AI7
D
125 139Right-handed alpha
Helix 80
AI8
D
142 152Right-handed 310
Helix 81
AI9
D
153 158Right-handed alpha
Helix 82
AJ1
D
158 169Right-handed alpha
Helix 83
AJ2
D
170 173Right-handed 310
Helix 84
AJ3
D
174 182Right-handed alpha
Helix 85
AJ4
D
190 215Right-handed alpha
Helix 86
AJ5
D
231 236Right-handed alpha
Helix 87
AJ6
D
256 269Right-handed alpha
Helix 88
AJ7
D
270 271Right-handed 310
Helix 89
AJ8
D
280 282Right-handed 310
Helix 90
AJ9
D
283 293Right-handed alpha
Helix 91
AK1
D
309 316Right-handed 310
Helix 92
AK2
D
340 342Right-handed 310
Helix 93
AK3
D
346 356Right-handed alpha
Helix 94
AK4
D
356 373Right-handed alpha
Helix 95
AK5
D
386 401Right-handed alpha
Helix 96
AK6
D
411 417Right-handed alpha
Helix 97
AK7
D
418 431Right-handed alpha
Helix 98
AK8
D
436 442Right-handed alpha
Helix 99
AK9
D
448 477Right-handed alpha
Helix 100
AL1
E
67 73Right-handed alpha
Helix 101
AL2
E
77 84Right-handed alpha
Helix 102
AL3
E
86 103Right-handed alpha
Helix 103
AL4
E
108 122Right-handed alpha
Helix 104
AL5
E
125 139Right-handed alpha
Helix 105
AL6
E
142 152Right-handed 310
Helix 106
AL7
E
153 158Right-handed alpha
Helix 107
AL8
E
158 169Right-handed alpha
Helix 108
AL9
E
170 173Right-handed 310
Helix 109
AM1
E
174 182Right-handed alpha
Helix 110
AM2
E
190 215Right-handed alpha
Helix 111
AM3
E
231 236Right-handed alpha
Helix 112
AM4
E
256 269Right-handed alpha
Helix 113
AM5
E
270 271Right-handed 310
Helix 114
AM6
E
280 282Right-handed 310
Helix 115
AM7
E
283 293Right-handed alpha
Helix 116
AM8
E
309 316Right-handed 310
Helix 117
AM9
E
340 342Right-handed 310
Helix 118
AN1
E
346 356Right-handed alpha
Helix 119
AN2
E
356 373Right-handed alpha
Helix 120
AN3
E
386 401Right-handed alpha
Helix 121
AN4
E
411 417Right-handed alpha
Helix 122
AN5
E
418 431Right-handed alpha
Helix 123
AN6
E
436 442Right-handed alpha
Helix 124
AN7
E
448 477Right-handed alpha
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There are 5 sheets in PDB entry 5CUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
403 404parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
403 404parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 338first strand
Strand 2
C
403 404parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
337 338first strand
Strand 2
D
403 404parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
337 338first strand
Strand 2
E
403 404parallel
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