Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5CVA entry
There are 6 chains in PDB entry 5CVA
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 3 | PRO 66 |
B
|
SER 2 | ALA 63 |
C
|
SER 2 | LEU 67 |
D
|
PRO 13 | ALA 70 |
E
|
GLY 15 | VAL 59 |
F
|
PRO 10 | LEU 67 |
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There are 8
helices in PDB entry 5CVA. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 40 |
55 | Right-handed alpha |
Helix 2 |
AA2 | A
| 55 |
64 | Right-handed alpha |
Helix 3 |
AA3 | B
| 41 |
62 | Right-handed alpha |
Helix 4 |
AA4 | C
| 40 |
65 | Right-handed alpha |
Helix 5 |
AA5 | D
| 40 |
55 | Right-handed alpha |
Helix 6 |
AA6 | D
| 55 |
64 | Right-handed alpha |
Helix 7 |
AA7 | E
| 41 |
59 | Right-handed alpha |
Helix 8 |
AA8 | F
| 40 |
65 | Right-handed alpha |
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There are no sheets in PDB entry
5CVA
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il